scverse/spatialdata
An open and interoperable data framework for spatial omics data
PythonBSD-3-Clause
Issues
- 7
- 2
- 1
Bounding box query vs polygon query for circles
#669 opened by LucaMarconato - 3
- 1
No matching definition for argument type
#666 opened by wangjiawen2013 - 6
- 0
legend height
#665 opened by wangjiawen2013 - 1
index is out of bounds
#663 opened by wangjiawen2013 - 0
Disallow zero-len dataframes when parsing
#662 opened by LucaMarconato - 3
- 3
- 1
- 0
Better handing of data with non monotonically increasing index in `PointsModel.parse()`
#649 opened by LucaMarconato - 2
`rasterize_bins()` problem with coordinate transformations and with polygons.
#650 opened by LucaMarconato - 1
simplify tests where `Identity()` was needed as last transformation in a sequence
#645 opened by LucaMarconato - 0
`ImageTilesDataset` not in docs
#642 opened by LucaMarconato - 3
- 4
- 5
- 2
- 20
- 1
concatenate tables or not
#635 opened by wangjiawen2013 - 1
Improvement to the docs
#631 opened by LucaMarconato - 0
Invalid shapes during vectorization
#583 opened by quentinblampey - 3
Installation error in Intel processor Macbook
#632 opened by shashkat - 6
- 0
- 5
- 1
Aggregation notebook is missing output
#612 opened by ivirshup - 1
- 2
multiprocessing for dataloader
#590 opened by xiao233333 - 2
- 5
- 6
Can't save transformation result
#558 opened by Ithinky - 3
Saving large files to .zarr
#571 opened by asom - 11
set_table_annotates_spatialelement error
#603 opened by wangjiawen2013 - 0
numpy 2.0.0 support
#602 opened by LucaMarconato - 0
Issue with aggregation when `.attrs` is replaced instead of `.attrs['transform']`
#600 opened by LucaMarconato - 8
MultiScaleImage datatree.DataTree attrs in sdata object lost when writing to disk
#576 opened by simone-codeluppi - 1
`_get_element_annotators()` should be public.
#595 opened by LucaMarconato - 0
Behavior when the landmarks for alignment are chosen without respecting the order
#586 opened by LucaMarconato - 1
Experiment with rasterization on Visium HD like
#572 opened by LucaMarconato - 0
- 1
- 1
Registering a new table with a coordinate system
#573 opened by pakiessling - 8
How to create a spatialdata object from a VisiumHD dataset preprocessed by spaceranger?
#563 opened by OMIC-coding - 1
- 0
`polygon_query()` with `filter_table=True` on labels should filter the table.
#564 opened by LucaMarconato - 0
Test aggregation of vector data by vector data when `agg_func` is a `list` of `str`
#561 opened by LucaMarconato - 1