Pinned Repositories
cedarsbioGitHW
A homework folder for Cedars compbio students
cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
kgbio
My one-stop-shop for bioinformatics utilities that I have written over the years.
MegaQC
Web application to collect and visualise data across multiple MultiQC runs.
multi_padlock_design
Padlock design pipeline for multiplexed assay with multiple probes per target in cDNA-based expression profiling
pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
igv-notebook
Module for embedding igv.js in an IPython notebook
nextflow
A DSL for data-driven computational pipelines
scvi-tools
Deep probabilistic analysis of single-cell and spatial omics data
gouinK's Repositories
gouinK/cedarsbioGitHW
A homework folder for Cedars compbio students
gouinK/cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
gouinK/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
gouinK/kgbio
My one-stop-shop for bioinformatics utilities that I have written over the years.
gouinK/MegaQC
Web application to collect and visualise data across multiple MultiQC runs.
gouinK/multi_padlock_design
Padlock design pipeline for multiplexed assay with multiple probes per target in cDNA-based expression profiling
gouinK/pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.