Pinned Repositories
action-sphinx-docs-to-gh-pages
GitHub Action: The sphinx documentation in a repository is compiled and deployed to GitHub Pages through the gh-pages branch.
am-segmentation
Imaging mass spectrometry ablation marks segmentation with convolutional neural networks.
anndata
Annotated data.
cellxgene-gateway
Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.
dask
Parallel computing with task scheduling
myst-nb-json
A MIME-type plugin for rendering JSON output from Jupyter notebooks to HTML
ngff-writer
A writer and reader for NGFF OME-Zarr datasets
spatialdata
An open and universal framework for processing spatial omics data
metaspace-converter
Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData
napari
napari: a fast, interactive, multi-dimensional image viewer for python
aeisenbarth's Repositories
aeisenbarth/ngff-writer
A writer and reader for NGFF OME-Zarr datasets
aeisenbarth/myst-nb-json
A MIME-type plugin for rendering JSON output from Jupyter notebooks to HTML
aeisenbarth/ome-zarr-py
Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
aeisenbarth/action-sphinx-docs-to-gh-pages
GitHub Action: The sphinx documentation in a repository is compiled and deployed to GitHub Pages through the gh-pages branch.
aeisenbarth/am-segmentation
Imaging mass spectrometry ablation marks segmentation with convolutional neural networks.
aeisenbarth/anndata
Annotated data.
aeisenbarth/cellxgene-gateway
Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.
aeisenbarth/dask
Parallel computing with task scheduling
aeisenbarth/imageio
Python library for reading and writing image data
aeisenbarth/magicgui
build GUIs from python functions, using magic.
aeisenbarth/MyST-NB
Parse and execute ipynb files in Sphinx
aeisenbarth/napari
napari: a fast, interactive, multi-dimensional image viewer for python
aeisenbarth/napari-ome-zarr
A reader for zarr backed OME-NGFF images
aeisenbarth/napari-spatialdata
Interactive visualization of spatial omics data
aeisenbarth/prefect
The easiest way to automate your data
aeisenbarth/spatialdata
An open and universal framework for processing spatial omics data
aeisenbarth/metaspace
Cloud engine and platform for metabolite annotation for imaging mass spectrometry
aeisenbarth/multiscale-spatial-image
Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
aeisenbarth/pydantic-yaml
YAML support for Pydantic models
aeisenbarth/python-readchar
Python library to read characters and key strokes
aeisenbarth/scanpy
Single-cell analysis in Python. Scales to >1M cells.
aeisenbarth/scikit-image
Image processing in Python
aeisenbarth/spatial-image
A multi-dimensional spatial image data structure for scientific Python.
aeisenbarth/spatialdata-io
aeisenbarth/spatialdata-notebooks
aeisenbarth/spatialdata-plot
Static plotting for spatialdata
aeisenbarth/spatialdata-sandbox
aeisenbarth/sphinx
The Sphinx documentation generator
aeisenbarth/sphinx-autodoc-typehints
Type hints support for the Sphinx autodoc extension
aeisenbarth/sphinx-click
A Sphinx plugin to automatically document click-based applications