Pinned Repositories
sopa
Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)
novae
Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many other features.
scyan
Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effect and can be used for debarcoding or population discovery.
facteur-de-reussite
fdr-back
fdr-front
spatialdata-io
spatialdata-workshops
spatialdata_xenium_explorer
Interoperability between SpatialData and the Xenium Explorer
spatialdata
An open and interoperable data framework for spatial omics data
quentinblampey's Repositories
quentinblampey/spatialdata_xenium_explorer
Interoperability between SpatialData and the Xenium Explorer
quentinblampey/facteur-de-reussite
quentinblampey/fdr-back
quentinblampey/fdr-front
quentinblampey/spatialdata-io
quentinblampey/spatialdata-workshops
quentinblampey/absa-nlp
quentinblampey/benchmark_timing
quentinblampey/cytometry_benchmark
quentinblampey/dl-template
quentinblampey/bioconda-recipes
Conda recipes for the bioconda channel.
quentinblampey/dlmi-project
quentinblampey/ecosystem-packages
Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
quentinblampey/graph_attention_network
quentinblampey/grm_belief_propagation
quentinblampey/MERN
V0 of a MERN stack project.
quentinblampey/myUber
quentinblampey/ncv
quentinblampey/python-igraph
Python interface for igraph
quentinblampey/quentinblampey
My personal repository.
quentinblampey/single-cell-best-practices
https://www.sc-best-practices.org
quentinblampey/smk_cli_snippet
quentinblampey/sopa_benchmark
Benchmarking the sopa pipeline
quentinblampey/spatialdata
An open and interoperable data framework for spatial omics data
quentinblampey/spatialdata-notebooks
quentinblampey/spatialdata-sandbox
quentinblampey/word2vec