scverse/napari-spatialdata

Issues

• Sometimes, cannot rename shapes layer.

  #319 opened 2 months ago by LucaMarconato
  3

• Cannot set custom colors for categorical variables

  #324 opened a month ago by LucaCalderoni
  8

• RGB Colormap missing

  #325 opened a month ago by minhtien-trinh
  0

• [test-bot] Benchmark tests failing

  #308 opened a month ago by github-actions
  2

• Saving and reloading images directly on sdata within napari

  #310 opened 2 months ago by rtubelleza
  3

• color legend for categorical annoation in table

  #242 opened a month ago by ynanli
  8

• Test for shapes

  #322 opened a month ago by LucaMarconato
  1

• Test plotting annotations

  #321 opened a month ago by LucaMarconato
  0

• Bug when saving a shape after showing a shape layer

  #314 opened 2 months ago by LucaMarconato
  1

• Problem when plotting certain points annotations columns

  #287 opened 2 months ago by LucaMarconato
  3

• pyqt error

  #316 opened 2 months ago by pfren1998
  2

• Improvements around saving annotations to disk

  #234 opened 7 months ago by LucaMarconato
  0

• Add design schema for napari-spatialdata and interacting plugins

  #313 opened 2 months ago by LucaMarconato
  0

• Public API to refresh element lists

  #312 opened 2 months ago by LucaMarconato
  0

• Error with channel slider due to #276

  #302 opened 3 months ago by LucaMarconato
  1

• [test-bot] Benchmark tests failing

  #306 opened 3 months ago by github-actions
  0

• Refine support for tables annotating dataframes

  #305 opened 3 months ago by LucaMarconato
  0

• Problem with substituting sdata.table with external AnnData

  #293 opened 3 months ago by gboscagli
  11

• Selecting individual channels throws a ValueError

  #282 opened 3 months ago by MeyerBender
  4

• Could not load the Qt platform plugin "xcb" in "" even though it was found.

  #298 opened 3 months ago by methornton
  8

• [test-bot] Benchmark tests failing

  #296 opened 3 months ago by github-actions
  0

• Coordinate system widget shown twice

  #286 opened 3 months ago by LucaMarconato
  0

• Coordinate systems widget not sorted

  #284 opened 3 months ago by aeisenbarth
  5

• The channel slider works only for a single channel image.

  #273 opened 4 months ago by LucaMarconato
  2

• Enhancement idea: Large multiscale / pyramidal image visualisation

  #241 opened 4 months ago by rtubelleza
  9

• napari can only save the first shape

  #272 opened 4 months ago by wangjiawen2013
  1

• Saving with Shift+E seems to fail when the object is not backed.

  #271 opened 4 months ago by LucaMarconato
  0

• annotation widget mac specific issues

  #250 opened 5 months ago by melonora
  1

• Shapes performance

  #249 opened 5 months ago by melonora
  1

• Remove `_models.py`

  #248 opened 5 months ago by LucaMarconato
  4

• Shape layer geometry changes when saving object to SpatialData object

  #237 opened 4 months ago by olivermccallion
  3

• plot theme

  #268 opened 4 months ago by wangjiawen2013
  3

• Problems when saving multiple annotations tables for the same element

  #260 opened 5 months ago by LucaMarconato
  4

• Bug with contrast limit calculation for multiscale images

  #262 opened 5 months ago by LucaMarconato
  0

• Named axes and pixel resolution

  #263 opened 5 months ago by melonora
  0

• napari xcb plugin error

  #258 opened 5 months ago by wangjiawen2013
  8

• Error when filtering on multiple tables

  #244 opened 6 months ago by berombau
  1

• NaN values colored if non-NaN values are only one

  #238 opened 6 months ago by aeisenbarth
  2

• Image appears flipped in Napari

  #236 opened 6 months ago by pakiessling
  8

• mportError: cannot import name '_get_element_annotators' from 'spatialdata._core.query.relational_query'

  #230 opened 7 months ago by Nazim0001
  13

• How Do I Import Metadata Columns of my Shapes File into Spatialdata?

  #231 opened 7 months ago by jeffquinn-msk
  1

• Shift+E creates Polygon Z in some cases

  #218 opened 7 months ago by LucaMarconato
  2

• Colorbar and slider broken

  #227 opened 7 months ago by LucaMarconato
  1

• Warn users that layers with many shapes are slow to render

  #213 opened 7 months ago by LucaMarconato
  0

• Warn about element/table mismatches. Coloring the background

  #221 opened 8 months ago by LucaMarconato
  0

• "Color by:" disappears after changing and going back to a layer. Proposed alternative approach

  #220 opened 8 months ago by LucaMarconato
  0

• Fix default size for points elements

  #214 opened 8 months ago by LucaMarconato
  0

• Wrong use of `size` parameter for points layer

  #209 opened 8 months ago by LucaMarconato
  2

• Changing layer name upon showing with QtAdataViewWidget

  #203 opened 8 months ago by melonora
  0

• remove _pkg_constants

  #206 opened 8 months ago by melonora
  0