Pinned Repositories
batchie_network_plot
Network plot for batchie data
BayesTME
Baysor
Bayesian Segmentation of Spatial Transcriptomics Data
genome-nexus
Backend server for Genome Nexus
ramachandran_plot
Python script to make a ramachandran plot from a pdb file
jeffquinn-msk's Repositories
jeffquinn-msk/ramachandran_plot
Python script to make a ramachandran plot from a pdb file
jeffquinn-msk/batchie_network_plot
Network plot for batchie data
jeffquinn-msk/BayesTME
jeffquinn-msk/Baysor
Bayesian Segmentation of Spatial Transcriptomics Data
jeffquinn-msk/genome-nexus
Backend server for Genome Nexus
jeffquinn-msk/genome-nexus-importer
Import data into MongoDB for use by https://github.com/genome-nexus/genome-nexus/
jeffquinn-msk/ImgSegmentationPipeline
jeffquinn-msk/OncoCast
jeffquinn-msk/PopV
jeffquinn-msk/pycogaps
python API to the CoGAPS NMF package
jeffquinn-msk/scBokeh
scRNA-seq Data Visualization with Bokeh
jeffquinn-msk/SCRATCH-Annotation
SCRATCH subworkflow for cell annotation
jeffquinn-msk/SCRATCH-QC
SCRATCH subworkflow for align and quality control
jeffquinn-msk/singularity-rstudio
RStudio Server in a Singularity container
jeffquinn-msk/SpaceMarkers
An R/Bioconductor software tool to identify genes associated with latent space interactions in spatial transcriptomics.
jeffquinn-msk/timsconvert
jeffquinn-msk/utag
jeffquinn-msk/yapf-google-style-precommit
Mirror of the yapf package for pre-commit that uses google python style