zhouzhendiao

Pinned Repositories

• infercnv

  Inferring CNV from Single-Cell RNA-Seq

  Language:R52542575159

• Palantir

  Single cell trajectory detection

  Language:Jupyter Notebook2021011645

• rnaseq

  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

  Language:Nextflow807154622673

• muon

  muon is a multimodal omics Python framework

  Language:Python2021410528

• scanpy

  Single-cell analysis in Python. Scales to >1M cells.

  Language:Python1.8k521.7k582

• scirpy

  A scanpy extension to analyse single-cell TCR and BCR data.

  Language:Python2021028231

• scvelo

  RNA Velocity generalized through dynamical modeling

  Language:Python39712779102

• single-cell-best-practices

  https://www.sc-best-practices.org

  Language:Jupyter Notebook68717176150

• hub-mirror

  🚀 通过 GitHub Actions 将 gcr.io、registry.k8s.io、k8s.gcr.io、quay.io、ghcr.io 等国外镜像转换为国内镜像加速下载，支持 docker 和 containerd 使用，支持 x86 和 arm 架构

  Language:Go81832.6k458

• crisprseq

  A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).

  Language:Nextflow850

zhouzhendiao's Repositories