theislab/scvelo

Issues

• Could not find spliced / unspliced counts after merging data

  #1282 opened 2 months ago by liyiwang0725
  3

• New release

  #1287 opened 2 months ago by hschult
  0

• The inferred RNA velocity direction is not as expected

  #1286 opened 2 months ago by smallfishcui
  1

• Neighbors.compute_neighbors() got an unexpected keyword argument 'write_knn_indices'

  #1212 opened 9 months ago by akhst7
  7

• Velocyto question

  #1285 opened 2 months ago by Liripo
  2

• error from scv.pp.moments(adata)

  #1260 opened 6 months ago by QiqiGuo1996
  8

• Question on dependencies

  #1284 opened 2 months ago by dawe
  0

• Cells vanishing after merging processed .h5ad and spliced/unspliced matrix (also .h5ad)

  #1283 opened 2 months ago by LioLenr
  0

• Update and clean up logging

  #1280 opened 3 months ago by WeilerP
  0

• Update how documentation is built

  #1278 opened 3 months ago by WeilerP
  0

• Notebook links in documentation are broken

  #1272 opened 3 months ago by WeilerP
  0

• Update CR2 reference

  #1271 opened 3 months ago by WeilerP
  0

• Redundant Scanpy imports

  #1275 opened 3 months ago by WeilerP
  0

• Remove velovi

  #1273 opened 3 months ago by WeilerP
  0

• Question on normalisation

  #1259 opened 4 months ago by miktrinh
  0

• AttributeError after "scv.pp.moments" command

  #1269 opened 4 months ago by panapapa14
  1

• Unable to retrieve spliced/unspliced RNA from single nuclei isolation

  #1268 opened 4 months ago by hyjforesight
  1

• scv.tl.paga

  #1241 opened 9 months ago by hvgogogo
  5

• error in tl.paga: Invalid vertex ID

  #1266 opened 6 months ago by sokratiag
  2

• scv.tl.recover_dynamics() IndexError: list index out of range

  #1264 opened 6 months ago by AAA-3
  2

• NaN in velocity_umap

  #1265 opened 6 months ago by wahdeeyau
  0

• Metabolic labeling inference fails with latest Pandas

  #1261 opened 6 months ago by WeilerP
  0

• UMAP coordinates not transfering from Seurat

  #1258 opened 6 months ago by MeganRMonaghan
  1

• A task has failed to un-serialize. Please ensure that the arguments of the function are all picklable.

  #1257 opened 6 months ago by christophechu
  1

• can scvelo compare normal and diseased ( different stages)? why unspliced are more than spliced?

  #1254 opened 7 months ago by Flu09
  0

• Dependency problem on packages optax & chex

  #1255 opened 7 months ago by jasonleongbio
  1

• Shape of phase plot(U-S) changes after scv.pp.moments(adata)

  #1253 opened 7 months ago by yuzzini
  1

• Import error with `numpy>=2.0`

  #1251 opened 7 months ago by WeilerP
  0

• Velocyto in sc-RNAseq coupled TCRseq on 5'

  #1244 opened 7 months ago by Baldosisley
  0

• Significant cell count reduction after merging loom files with scvelo.merge

  #1248 opened 7 months ago by mayurdoke6
  1

• Significant cell count reduction after merging loom files with scvelo.merge

  #1249 opened 7 months ago by mayurdoke6
  1

• Export the neighbor graph from integrated Seurat objective and import to scvelo

  #1245 opened 8 months ago by Alvis-Jiang
  0

• scv.tl.velocity_graph(adata) has bug that it can't be run

  #1243 opened 9 months ago by rabbitpang
  1

• scv.read(adata.h5ad) does not load spliced and unspliced layers

  #1242 opened 9 months ago by mdu4003
  3

• More information about scvelo.datasets

  #1239 opened 9 months ago by mortunco
  1

• TypeError: Neighbors.compute_neighbors() got an unexpected keyword argument 'write_knn_indices'.

  #1235 opened 9 months ago by cnwokolo24
  4

• AttributeError: module 'scvelo' has no attribute 'pp'

  #1240 opened 9 months ago by Kalpi-ds
  1

• scv.pl.proportions() -- "axis 1 is out of bounds for array of dimension 1"

  #1237 opened 9 months ago by Alvis-Jiang
  0

• an error in failing to save stream figures aftering installing some packages like "mpi4py petsc petsc4py"

  #1236 opened 9 months ago by Shiywa
  0

• AttributeError: module 'scvelo' has no attribute 'DataFrame'

  #1232 opened 9 months ago by jwalewski
  1

• cannot use module of scvelo after import in Spyder

  #1227 opened 10 months ago by yulchen810
  1

• Setuptools incorrectly set up

  #1225 opened 10 months ago by WeilerP
  0

• scvelo release version is hard coded

  #1223 opened 10 months ago by WeilerP
  0

• Build not installed in release CI

  #1220 opened 10 months ago by WeilerP
  0

• Outdated `use_gpu` argument for VELOVI.train

  #1218 opened 10 months ago by WeilerP
  0

• TypeError: unsupported operand type(s) for -: 'str' and 'str'

  #1209 opened 10 months ago by suhuanhou
  1

• [Feature Request] Adding Save Functionality For scv.pl.hist()

  #1210 opened 10 months ago by jwalewski
  0

• Need help with the parsing of stream plot result

  #1215 opened 10 months ago by NikTuzov
  1

• Unable to import scvelo

  #1216 opened 10 months ago by jjia1
  2

• Too many dependencies are being installed

  #1214 opened 10 months ago by LouisFaure
  2