LouisFaure

PostDoc at Soldatov lab

Memorial Sloan Kettering Center CenterNew York

Pinned Repositories

deseq2py
python wrapper for DESeq2, compatible with scanpy
Language:Python41
dyntrack
DynTrack python package for the study of particle dynamics from 2D tracks
Language:C++1 2 00
glialfates_paper
Language:Jupyter Notebook5 2 01
Harmony-GPU
GPU implementation of Harmony, framework for connecting scRNA-seq data from discrete time points
Language:Jupyter Notebook00
scFates
a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
Language:Python48 2 311
scFates_notebooks
Language:Jupyter Notebook7 2 00
sensoryfates_paper
Code for reproducibility
Language:Jupyter Notebook35
sgnfates_paper
Language:Jupyter Notebook42
simpleppt
Python implementation of SimplePPT algorithm, with GPU acceleration
Language:Python1 2 00

LouisFaure's Repositories

LouisFaure/scFates
a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
Language:Python48 2 311
LouisFaure/scFates_notebooks
Language:Jupyter Notebook7 2 00
LouisFaure/glialfates_paper
Language:Jupyter Notebook5 2 01
LouisFaure/deseq2py
python wrapper for DESeq2, compatible with scanpy
Language:Python41
LouisFaure/sgnfates_paper
Language:Jupyter Notebook42
LouisFaure/Adrenal5HTP_paper
Language:Jupyter Notebook1
LouisFaure/dyntrack
DynTrack python package for the study of particle dynamics from 2D tracks
Language:C++1 2 00
LouisFaure/louisfaure.github.io
Language:HTML1 2 0
LouisFaure/simpleppt
Python implementation of SimplePPT algorithm, with GPU acceleration
Language:Python1 2 00
LouisFaure/Trajectory_Inference_workshop
Language:Jupyter Notebook1
LouisFaure/Harmony-GPU
GPU implementation of Harmony, framework for connecting scRNA-seq data from discrete time points
Language:Jupyter Notebook00
LouisFaure/3-step_paper
Language:Jupyter Notebook
LouisFaure/anndata2pagoda
Language:Python
LouisFaure/Blog_notebooks
Language:Jupyter Notebook
LouisFaure/blog_template
Language:HTML
LouisFaure/bulktools-py
python CLI for full bulk RNAseq pipeline, from fastq to anndata count matrix
Language:Python
LouisFaure/ChromaffinFates_paper
Language:Jupyter Notebook2 0
LouisFaure/coral_paper
Language:Jupyter Notebook
LouisFaure/cospend-nc
💰 💲hared budget manager Nextcloud app
Language:JavaScript0 0
LouisFaure/CurrentOpinion_review
Language:Jupyter Notebook
LouisFaure/ecosystem-packages
Registry for scverse ecosystem packages
0 0
LouisFaure/MetBrewer
Color palette package in R inspired by works at the Metropolitan Museum of Art in New York
Language:R
LouisFaure/muscledirection_paper
Language:Jupyter Notebook
LouisFaure/p2webapp
Language:JavaScript
LouisFaure/Palantir
Single cell trajectory detection
LouisFaure/pleorchis_project
Language:Python
LouisFaure/pynecone
Web apps in pure Python.
Language:Python
LouisFaure/rapids_singlecell
Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.
LouisFaure/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
Language:Python1
LouisFaure/scGTM
Single-cell generalized trendmodel (scGTM): a flexible and interpretable model for gene expression along cell pseudotime. This is a Python package for modeling the statistical relationship between pseudotime and gene expression data.