Pinned Repositories
deseq2py
python wrapper for DESeq2, compatible with scanpy
dyntrack
DynTrack python package for the study of particle dynamics from 2D tracks
glialfates_paper
Harmony-GPU
GPU implementation of Harmony, framework for connecting scRNA-seq data from discrete time points
scFates
a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
scFates_notebooks
sensoryfates_paper
Code for reproducibility
sgnfates_paper
simpleppt
Python implementation of SimplePPT algorithm, with GPU acceleration
LouisFaure's Repositories
LouisFaure/scFates
a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
LouisFaure/scFates_notebooks
LouisFaure/glialfates_paper
LouisFaure/deseq2py
python wrapper for DESeq2, compatible with scanpy
LouisFaure/sgnfates_paper
LouisFaure/Adrenal5HTP_paper
LouisFaure/dyntrack
DynTrack python package for the study of particle dynamics from 2D tracks
LouisFaure/louisfaure.github.io
LouisFaure/simpleppt
Python implementation of SimplePPT algorithm, with GPU acceleration
LouisFaure/Trajectory_Inference_workshop
LouisFaure/Harmony-GPU
GPU implementation of Harmony, framework for connecting scRNA-seq data from discrete time points
LouisFaure/3-step_paper
LouisFaure/anndata2pagoda
LouisFaure/Blog_notebooks
LouisFaure/blog_template
LouisFaure/bulktools-py
python CLI for full bulk RNAseq pipeline, from fastq to anndata count matrix
LouisFaure/ChromaffinFates_paper
LouisFaure/coral_paper
LouisFaure/cospend-nc
💰 💲hared budget manager Nextcloud app
LouisFaure/CurrentOpinion_review
LouisFaure/ecosystem-packages
Registry for scverse ecosystem packages
LouisFaure/MetBrewer
Color palette package in R inspired by works at the Metropolitan Museum of Art in New York
LouisFaure/muscledirection_paper
LouisFaure/p2webapp
LouisFaure/Palantir
Single cell trajectory detection
LouisFaure/pleorchis_project
LouisFaure/pynecone
Web apps in pure Python.
LouisFaure/rapids_singlecell
Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.
LouisFaure/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
LouisFaure/scGTM
Single-cell generalized trendmodel (scGTM): a flexible and interpretable model for gene expression along cell pseudotime. This is a Python package for modeling the statistical relationship between pseudotime and gene expression data.