Export the neighbor graph from integrated Seurat objective and import to scvelo
Alvis-Jiang opened this issue · 0 comments
Alvis-Jiang commented
Hi,
I have an integrated Seurat objective with SCT, and I want to use the precomputed PCA, UMAP and neighbor graph for scvelo. Could you give me some guidance on what content of neighbor graph should I export from seurat?And the neighbor of scanpy includes "distance" and "connectiveness", I assumed that snn graph could be the connectiveness, but what should I export from seurat as "distance" in the anndata?
Thank you so much!