theislab/scvelo

Export the neighbor graph from integrated Seurat objective and import to scvelo

Alvis-Jiang opened this issue · 0 comments

Hi,

I have an integrated Seurat objective with SCT, and I want to use the precomputed PCA, UMAP and neighbor graph for scvelo. Could you give me some guidance on what content of neighbor graph should I export from seurat?And the neighbor of scanpy includes "distance" and "connectiveness", I assumed that snn graph could be the connectiveness, but what should I export from seurat as "distance" in the anndata?

Thank you so much!