christophechu

A student from Huazhong University of Science and Technology

WuHan

Pinned Repositories

dynamo-release
Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
Language:Python406 10 24959
SCLC_atlas-HTAN
Single-cell atlas of SCLC leveraging scRNA-seq, MIBI, and Vectra imaging, as part of the Human Tumor Atlas Network
Language:Jupyter Notebook00
training-material
A collection of Galaxy-related training material
Language:HTML00
infercnvpy
Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
Language:Python122 3 5027
numbat
Haplotype-aware CNV analysis from single-cell RNA-seq
Language:R157 9 17322
seurat
R toolkit for single cell genomics
Language:R2.2k 75 7.7k891
anndata
Annotated data.
Language:Python523 14 691149
scanpy
Single-cell analysis in Python. Scales to >1M cells.
Language:Python1.8k 52 1.7k583
scvi-tools
Deep probabilistic analysis of single-cell and spatial omics data
Language:Python1.2k 27 997341
omicverse
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
Language:Jupyter Notebook273 5 6732

christophechu/SCLC_atlas-HTAN
Single-cell atlas of SCLC leveraging scRNA-seq, MIBI, and Vectra imaging, as part of the Human Tumor Atlas Network
Language:Jupyter Notebook00
christophechu/training-material
A collection of Galaxy-related training material
Language:HTML00