Issues
- 6
SparseDataset errors when using fancy indexing along two dimensions when indptr is 64bit
#1349 opened by ivirshup - 8
GPU tests failing (and taking a long time to run)
#1357 opened by ivirshup - 3
GPU CI tests failing
#1410 opened by ivirshup - 2
- 2
- 1
Potentially flaky benchmark
#1513 opened by ilan-gold - 1
Make the call to `_check_uniqueness()` optional in `_init_as_actual()` (and `__init__()`)
#1502 opened by LucaMarconato - 1
UMAP of gene subset of adata
#1488 opened by malonzm1 - 12
- 0
- 0
`concat_on_disk` outer join
#1503 opened by ilan-gold - 7
Using `Pint` for units
#1483 opened by ilan-gold - 1
String indexes in var lead to UserWarning
#1448 opened by tracy666 - 3
Issue when setting anndata.X to numpy array
#1494 opened by DanLesman - 0
- 0
- 2
- 4
concat_on_disk should use int64 indptrs by default so that it can concatenate large files
#1470 opened by agdenadel - 0
NotImplementedError with concat_on_disk
#1492 opened by minigel - 1
Error using sc.pl.stacked_violin
#1489 opened by malonzm1 - 0
Move tests out of the package
#1451 opened by flying-sheep - 3
memory usage of concat
#1482 opened by z5ouyang - 1
Error: Expected a python object, received a character
#1476 opened by UboCA - 1
AnnCollection cannot be converted to AnnData
#1383 opened by jwalewski - 4
TypeError: Can't implicitly convert non-string objects to strings
#1473 opened by Rafael-Silva-Oliveira - 3
- 8
`read_elem_as_dask`
#1430 opened by ivirshup - 0
Refactor `BaseCompressedSparseDataset` and subclasses to remove `backed_{csr,csc}_matrix`
#1456 opened by ilan-gold - 0
- 1
Error when merging 2 different anndatas with int64 indptr csr_matrix chunked dask arrays
#1356 opened by mumichae - 1
Incorrect merging of `pd.Series` in `AnnCollection`
#1352 opened by ordabayevy - 1
Utility for loading dask array from SparseDataset
#1392 opened by ivirshup - 0
CZI files' `var` count changd
#1438 opened by ilan-gold - 2
`FileNotFoundError: [Errno 2] No such file or directory: 'llvm-config'` on CI
#1433 opened by ilan-gold - 0
Cupy sparse in dask
#1381 opened by ivirshup - 4
Include metadata when converting to Pandas DataFrame
#1399 opened by WeilerP - 1
adata.raw = adata
#1405 opened by Flu09 - 1
dask.array.store but with anndata schema
#1403 opened by ivirshup - 0
Add working `GroupStorageType` type annotation
#1414 opened by flying-sheep - 0
`to_df` docstrings
#1401 opened by WeilerP - 5
Indexing With a Dask Array
#1404 opened by ilan-gold - 11
- 1
Invalid type of X ValueError lists unclear accepted type
#1394 opened by eroell - 2
Indicate in on-disk HDF5 specification if indices of sparse matrices are sorted
#1388 opened by arteymix - 14
Docker container + Pycharm + scanpy + anndata
#1368 opened by LysSanzMoreta - 2
Error with AnnData.__init__(adata,asview = True)
#1382 opened by colganwi - 7
- 0
Merging functionality for AnnCollections
#1350 opened by jwalewski - 10
We broke scanpy’s tests
#1342 opened by flying-sheep - 2