ilan-gold

Helmholtz ZentrumMünchen

Pinned Repositories

geotiff.js
geotiff.js is a small library to parse TIFF files for visualization or analysis. It is written in pure JavaScript, and is usable in both the browser and node.js applications.
Language:JavaScript836 31 253175
viv
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
Language:JavaScript264 14 26641
anndata
Annotated data.
Language:Python0 1 00
anndata-tutorials
Use cases for anndata.
Language:Jupyter Notebook0 0 00
autoplay
Messing around in React/Flask/MongoDB to get Autoplaying Media
Language:JavaScript0 1 00
benchmark-viv
Benchmarking for Viv.
Language:Jupyter Notebook0 2 00
chrome-http2-single-file
Language:JavaScript1 2 00
deck.gl
WebGL2 powered visualization framework
Language:TypeScript11.9k 1.7k 3k2.1k
vitessce
Vitessce is a visual integration tool for exploration of spatial single-cell experiments.
Language:JavaScript147 8 87936

ilan-gold's Repositories

ilan-gold/chrome-http2-single-file
Language:JavaScript1 2 00
ilan-gold/anndata
Annotated data.
Language:Python0 1 00
ilan-gold/anndata-tutorials
Use cases for anndata.
Language:Jupyter Notebook0 0 00
ilan-gold/autoplay
Messing around in React/Flask/MongoDB to get Autoplaying Media
Language:JavaScript0 1 00
ilan-gold/benchmark-viv
Benchmarking for Viv.
Language:Jupyter Notebook0 2 00
ilan-gold/cs231n
My answers to the cs231n problem sets
Language:Jupyter Notebook1 0
ilan-gold/dask
Parallel computing with task scheduling
Language:Python0 0
ilan-gold/deck.gl
WebGL2 powered geospatial visualization layers
Language:JavaScript1 0
ilan-gold/deck.gl-data
Data for the data visualization library deck.gl examples (https://uber.github.io/deck.gl/#/)
1 0
ilan-gold/example-sphinx-basic
A basic Sphinx project for Read the Docs
Language:Python0 0
ilan-gold/geotiff.js
geotiff.js is a small library to parse TIFF files for visualization or analysis. It is written in pure JavaScript, and is usable in both the browser and node.js applications.
Language:JavaScript1
ilan-gold/GLUE
Graph-linked unified embedding for single-cell multi-omics data integration
Language:Python1 0
ilan-gold/image_zarr_pyramid_generation
Some quick and dirty python for generating a zarr image pyramid.
Language:Jupyter Notebook2 0
ilan-gold/luma.gl
High-performance Toolkit for WebGL-based Data Visualization
Language:JavaScript1 0
ilan-gold/luma.gl-Multiple-Texture-Types
A repo for reproducing a luma.gl issue.
Language:JavaScript2 0
ilan-gold/lzw-tiff-decoder
A WASM-based decoder for TIFF LZW compression.
Language:Rust1 0
ilan-gold/math.gl
A 3D/WebGL math library
Language:JavaScript1 0
ilan-gold/multigrate
Multigrate: multiomic data integration
Language:Python1 0
ilan-gold/scanpy
Single-cell analysis in Python. Scales to >1M cells.
Language:Python0 0
ilan-gold/scanpy-tutorials
Scanpy Tutorials.
Language:Jupyter Notebook0 0
ilan-gold/scipy
SciPy library main repository
ilan-gold/scvi-tools-skeleton
Template repository for creating novel models with scvi-tools
Language:Python1 0
ilan-gold/squidpy
Spatial Single Cell Analysis in Python
Language:Python1 0
ilan-gold/testgl_xr
A quick demo of getting an image tile of high bit-per-channel depth and rendering it in WebGL
Language:HTML2 0
ilan-gold/torchquad
Numerical integration in arbitrary dimensions on the GPU using PyTorch / TF / JAX
Language:Python0 0
ilan-gold/vitessce-data
Utils for loading HuBMAP data formats
Language:Python1 0
ilan-gold/viv
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Bio-Formats-compatible Zarr and OME-TIFF.
Language:JavaScript1 0
ilan-gold/xarray
N-D labeled arrays and datasets in Python
Language:Python0 0
ilan-gold/xtiff
A tiny Python library for writing multi-channel TIFF stacks.
Language:Python1 0
ilan-gold/zarr.js
Javascript implementation of Zarr (found at https://zarr.readthedocs.io/en/stable/)