Pinned Repositories
viv
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
anndata
Annotated data.
anndata-tutorials
Use cases for anndata.
chrome-http2-single-file
zarrs-python
anndata
Annotated data.
deck.gl
WebGL2 powered visualization framework
vitessce
Vitessce is a visual integration tool for exploration of spatial single-cell experiments.
ilan-gold's Repositories
ilan-gold/zarrs-python
ilan-gold/anndata
Annotated data.
ilan-gold/anndata-tutorials
Use cases for anndata.
ilan-gold/arrayloader-benchmarks
ilan-gold/autoplay
Messing around in React/Flask/MongoDB to get Autoplaying Media
ilan-gold/cs231n
My answers to the cs231n problem sets
ilan-gold/dask
Parallel computing with task scheduling
ilan-gold/deck.gl
WebGL2 powered geospatial visualization layers
ilan-gold/example-sphinx-basic
A basic Sphinx project for Read the Docs
ilan-gold/geotiff.js
geotiff.js is a small library to parse TIFF files for visualization or analysis. It is written in pure JavaScript, and is usable in both the browser and node.js applications.
ilan-gold/GLUE
Graph-linked unified embedding for single-cell multi-omics data integration
ilan-gold/luma.gl
High-performance Toolkit for WebGL-based Data Visualization
ilan-gold/lzw-tiff-decoder
A WASM-based decoder for TIFF LZW compression.
ilan-gold/math.gl
A 3D/WebGL math library
ilan-gold/mudata
Multimodal Data (.h5mu) implementation for Python
ilan-gold/multigrate
Multigrate: multiomic data integration
ilan-gold/release-please-test
ilan-gold/scanpy
Single-cell analysis in Python. Scales to >1M cells.
ilan-gold/scanpy-tutorials
Scanpy Tutorials.
ilan-gold/scipy
SciPy library main repository
ilan-gold/scvi-tools-skeleton
Template repository for creating novel models with scvi-tools
ilan-gold/squidpy
Spatial Single Cell Analysis in Python
ilan-gold/torchquad
Numerical integration in arbitrary dimensions on the GPU using PyTorch / TF / JAX
ilan-gold/towncrier
Manage the release notes for your project.
ilan-gold/viv
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Bio-Formats-compatible Zarr and OME-TIFF.
ilan-gold/xarray
N-D labeled arrays and datasets in Python
ilan-gold/xtiff
A tiny Python library for writing multi-channel TIFF stacks.
ilan-gold/zarr-python
An implementation of chunked, compressed, N-dimensional arrays for Python.
ilan-gold/zarrs
A rust library for the Zarr storage format for multidimensional arrays and metadata
ilan-gold/zarrs_tools
Various tools for creating and manipulating Zarr v3 data with the zarrs rust crate