Pinned Repositories
anndata-benchmarks
Benchmarks of AnnData using asv
anndata-paper
anndata joss paper
binsparse-python
constclust
Consistent Clusters for scRNA-seq
JuliaUsage
Using Julia to look at Julia usage.
sc-interchange
Better interchange for single cell tools
anndata
Annotated data.
genomic-features
Genomic Features in Python from BioConductor's AnnotationHub
scanpy
Single-cell analysis in Python. Scales to >1M cells.
spatialdata
An open and interoperable data framework for spatial omics data
ivirshup's Repositories
ivirshup/binsparse-python
ivirshup/anndata-benchmarks
Benchmarks of AnnData using asv
ivirshup/gh-pr-create-web-with-template
Demo for bug report
ivirshup/anndata
Annotated data.
ivirshup/anndataR
AnnData interoperability in R
ivirshup/array-api-compat
Compatibility layer for NumPy to support the Array API
ivirshup/asv
Airspeed Velocity: A simple Python benchmarking tool with web-based reporting
ivirshup/binsparse-specification
A cross-platform binary storage format for sparse data, particularly sparse matrices.
ivirshup/cloud-user-docs
ivirshup/datashader
Reveal everything even in your largest datasets, by turning them into images.
ivirshup/ecosystem-packages
Registry for scverse ecosystem packages
ivirshup/genomic-features
ivirshup/github-playground
Where I can play around with github features
ivirshup/hammerspoon-config
ivirshup/jp
CLI for Jupyter convenience
ivirshup/kerchunk
Cloud-friendly access to archival data
ivirshup/numcodecs
A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.
ivirshup/pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
ivirshup/pytest
The pytest framework makes it easy to write small tests, yet scales to support complex functional testing
ivirshup/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
ivirshup/scanpy-tutorials
Scanpy Tutorials.
ivirshup/scikit-learn
scikit-learn: machine learning in Python
ivirshup/scipy
Scipy library main repository
ivirshup/scverse-tutorials
Tutorials for learning scverse
ivirshup/sklearn-ann
Integration with (approximate) nearest neighbors libraries for scikit-learn + clustering based on with kNN-graphs.
ivirshup/sparse
Sparse multi-dimensional arrays for the PyData ecosystem
ivirshup/spatialdata
Spatial Data
ivirshup/xarray
N-D labeled arrays and datasets in Python
ivirshup/zarr-python
An implementation of chunked, compressed, N-dimensional arrays for Python.
ivirshup/zeps
Zarr Enhancement Proposals