z5ouyang

Pinned Repositories

BiocParallel
Bioconductor facilities for parallel evaluation
Language:R67 19 16629
deepTools
Tools to process and analyze deep sequencing data.
Language:Python675 36 935208
cellxgene_VIP
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
Language:HTML129 6 10144
Xenium_benchmarking
Code used to benchmark Xenium
Language:Jupyter Notebook37 1 75
cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
Language:Jupyter Notebook1.3k 29 873382
seurat
R toolkit for single cell genomics
Language:R2.3k 73 7.9k906
anndata
Annotated data.
Language:Python570 14 724152
A.C.Rsuite
ATAC-, ChIP- and RNA-seq data analysis tool suite.
Language:R0 0 01
glassome_issues
This is the repository to track the issues/bugs for web-server
0 0 10
SnapATAC
Single Nucleus Analysis Pipeline for ATAC-seq
Language:R0 0 00

z5ouyang's Repositories

z5ouyang/A.C.Rsuite
ATAC-, ChIP- and RNA-seq data analysis tool suite.
Language:R0 0 01
z5ouyang/glassome_issues
This is the repository to track the issues/bugs for web-server
0 0 10
z5ouyang/SnapATAC
Single Nucleus Analysis Pipeline for ATAC-seq
Language:R0 0 00