interactivereport/cellxgene_VIP
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
HTMLMIT
Issues
- 11
VIP Visualization in Plugin
#59 opened by xxlovexx1314 - 0
VIPlight function still contains the CLI
#110 opened by hartandrew - 1
Violin plot error : missing value
#109 opened by aniseedDB - 0
Install cellxgene_VIP on Windows
#108 opened by Seawestking - 1
timestamp file missing / permissions?
#107 opened by bobermayer - 12
Contribution: Dockerfile for cellxgene VIP
#102 opened by Neah-Ko - 1
functions for DEG analysis
#106 opened by jianglch - 4
Custom selection of VIP features
#104 opened by alex-d13 - 1
Error - cannot make plots
#101 opened by mariaUCL - 1
- 3
Heatmap plotting doesn’t work
#99 opened by nikhil-elucidata - 2
launch cellxgene with password
#74 opened by FADHLyemen - 2
Error in installation of .yml file
#75 opened by williestyle925 - 1
Genes missing/ no message in chrome developer tools
#100 opened by mariaUCL - 1
customized pathway database
#97 opened by lindongdo - 5
Build to custom docker container
#79 opened by eusebiu - 2
- 6
cellxgene_VIP install problem -- macos
#93 opened by theDierickxLab - 1
VIP.macOS.yml not working
#98 opened by dfermin - 2
PackagesNotFoundError yip.vml
#90 opened by dfermin - 2
Issues with installing R packages
#94 opened by TimothyTse001 - 0
Problem with finding host & port and specifying h5ad file to launch cellxgene
#95 opened by TimothyTse001 - 0
Install seemingly worked but CellXGene behind the visualization is not working
#96 opened by keithgmitchell - 2
Problems with gene names
#91 opened by Edhelia - 1
DEG in v1.1.1 ValueError: kth(=####)
#89 opened by dfermin - 4
Issue running cellxgene_VIP
#83 opened by curtisd0886 - 1
- 1
DEG not working!!!
#88 opened by AAlhendi1707 - 5
RNA information in multiomic visualization
#87 opened by shengyongniu - 0
Multiple multiomic datasets visualization
#86 opened by shengyongniu - 0
- 2
Error while plotting ComplexHeatmap
#76 opened by ankur-26197 - 5
- 2
Adapt VIP to CellxGene Ver 0.17.0
#55 opened by wariobrega - 1
Unable to build on docker
#80 opened by eusebiu - 0
Page loading error
#78 opened by JialiUMassWengLab - 7
CellxGene version 1.0
#62 opened by yalayoubi - 6
- 4
Memory leak issue
#66 opened by michaeleekk - 8
how to use spatial transcriptomics new VIP option
#54 opened by FADHLyemen - 2
Missing server.app.VIPInterface
#60 opened by dfermin - 2
EDIT: Failure to render VIP interface when using cellxgene_VIP on a remote server
#70 opened by haessar - 1
Cairo R package installation
#68 opened by wanliw96 - 2
ggrastr & viridis R Packages Not Found
#69 opened by trentleslie - 1
VIP suddenly not working
#67 opened by yalayoubi - 2
- 1
- 2
- 1
how to download selected cells?
#58 opened by FADHLyemen - 2
No VIP on the chrome site?
#57 opened by SimoniMD