Plugins are not available for the new cellxgene version 1.0.1
pkhoueiry opened this issue · 5 comments
@z5ouyang Upon upgrading cellxgene to version 1.0.1, the plugins are not available anymore!
I have the same issue. After installation there's a prompt to update to version 1.0.1 with pip install. After that the VIP panel disappeared. @interactivereport @z5ouyang any suggestions please?
After communicating with the developers, version 1.0.1 is not ready yet. So users should refrain from upgrading to v1.0.1 for now. Additionally it is advisable to use the Scanpy contained within the VIP virtual environment to generate the .h5ad files. I used a later version (v1.9.1) and cellxgene won't recognize the .h5ad file generated that way.
Same issue but our lab has just started self-hosting using cellxgene 1.0.1 for the past few months. We want to expand to use cellxgene VIP but are unsure whether to downgrade and risk issues with cellxgene-gateway and cellxgene by going back to the previous version, or wait for the new update to cellxgene VIP
Some datasets fail to launch on cellxgene-VIP using s3 urls as well. Although it has to with cellxgene version 0.16.8 and not VIP per se, but this issue has been fixed with cellxgene version >=1.0.1, so I'm curious if there are any plans to update VIP
If you run "config.sh" again in your conda env. will be using cellxgene v1.1.1