Pinned Repositories
CellDepot
CellDepot: A unified repository for scRNA-seq data and visual exploration. J Mol Biol. 2021 Dec 28:167425. doi: 10.1016/j.jmb.2021.167425.
CellMap
cellxgene_VIP
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
FundusNet
FundusNet: A Deep-Learning Approach for Fast Diagnosis of Neurodegenerative and Eye Diseases Using Fundus Images.
OmicsView
OmicsView: omics data analysis through interactive visual analytics
Quickomics
Quickomics: exploring omics data in an intuitive, interactive and informative manner. Bioinformatics. 2021 Apr 26:btab255.
RNASequest
scaleSC
ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1101/2025.01.28.635256
scRNAsequest
scRNASequest: an ecosystem of scRNA-seq analysis, visualization and publishing. BMC Genomics 24, 228 (2023).
xOmicsShiny
R Shiny application for cross omics data analysis. In revision with Bioinformatics Adv.
interactivereport's Repositories
interactivereport/cellxgene_VIP
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
interactivereport/Quickomics
Quickomics: exploring omics data in an intuitive, interactive and informative manner. Bioinformatics. 2021 Apr 26:btab255.
interactivereport/CellDepot
CellDepot: A unified repository for scRNA-seq data and visual exploration. J Mol Biol. 2021 Dec 28:167425. doi: 10.1016/j.jmb.2021.167425.
interactivereport/xOmicsShiny
R Shiny application for cross omics data analysis. In revision with Bioinformatics Adv.
interactivereport/scRNAsequest
scRNASequest: an ecosystem of scRNA-seq analysis, visualization and publishing. BMC Genomics 24, 228 (2023).
interactivereport/scaleSC
ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1101/2025.01.28.635256
interactivereport/RNASequest
interactivereport/OmicsView
OmicsView: omics data analysis through interactive visual analytics
interactivereport/CellMap
interactivereport/bioInfograph
bioInfograph: an online tool to design and display multi-panel scientific figure interactively
interactivereport/scRNAseq_DE
interactivereport/cellxgene
An interactive explorer for single-cell transcriptomics data
interactivereport/FundusNet
FundusNet: A Deep-Learning Approach for Fast Diagnosis of Neurodegenerative and Eye Diseases Using Fundus Images.
interactivereport/Mouse_Cuprizone_Spatial
interactivereport/CompBioAgent
interactivereport/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
interactivereport/HSCTGFB
STAT3 activation is central to TGF-β1 mediated primary human hepatic stellate cell activation
interactivereport/ZSF1
High resolution molecular and histological analysis of renal disease progression in ZSF1 (fa/fa cp) rats, a model of type 2 diabetic nephropathy
interactivereport/CSFinMS
Integrated single cell transcriptomics of cerebrospinal fluid cells in early Multiple Sclerosis
interactivereport/python-cheatsheet
Comprehensive Python Cheatsheet
interactivereport/SpatialSC_vis
interactivereport/SpliceHarmonization
Splice Result Harmonization from Multiple Methods
interactivereport/QuickRNASeq
QuickRNASeq lifts large-scale RNA-seq data analyses to the next level of automation and interactive visualization
interactivereport/rpy2
Interface to use R from Python
interactivereport/scRNA-seq_notes
A list of scRNA-seq analysis tools
interactivereport/whitepapers
Deep Learning Best Practices