interactivereport/RNASequest

Issues

• install.yml

  #29 opened 2 years ago by z5ouyang
  0

• EAreport library package issue

  #32 opened 2 years ago by wli7
  3

• Incorrect construction of gene annotation when not provided

  #34 opened 2 years ago by ferg-0
  1

• Make log file with output that comes to the screen

  #33 opened 2 years ago by ferg-0
  0

• Simplify the "analysis-*" meta id file

  #31 opened 3 years ago by ferg-0
  2

• Make numerical group levels allowed

  #30 opened 3 years ago by ferg-0
  1

• stringr & dplyr are required for gtf.gz_to_gene_info

  #28 opened 3 years ago by z5ouyang
  0

• Expression Plot legend mis-match

  #27 opened 3 years ago by z5ouyang
  4

• EApub Shinyone parameters

  #26 opened 3 years ago by xinmin-zhang
  7

• EApub not copying data to final production folder

  #25 opened 3 years ago by xinmin-zhang
  0

• Create a union of top 30 expressed genes plot with % of total reads

  #23 opened 3 years ago by ferg-0
  1

• Check "covariate_levels" refers to valid levels

  #24 opened 3 years ago by ferg-0
  3

• Project title is missing

  #22 opened 3 years ago by z5ouyang
  1

• additional column in meta not included in factor

  #20 opened 3 years ago by z5ouyang
  1

• NA in sample meta information

  #21 opened 3 years ago by z5ouyang
  1

• alignQC.pdf sample ordering

  #19 opened 3 years ago by ferg-0
  1

• Capture project path in ProjectInfo.csv file

  #18 opened 3 years ago by ferg-0
  1

• ProteinGeneName has too many genes

  #17 opened 3 years ago by xinmin-zhang
  1

• PC covariates static plots ordering

  #8 opened 3 years ago by ferg-0
  1

• PC covariates x-axis labels for long labels

  #7 opened 3 years ago by ferg-0
  1

• Variable ordering for PC_Covariate analysis and wiki update

  #6 opened 3 years ago by ferg-0
  1

• EADA on demo data

  #16 opened 3 years ago by ferg-0
  2

• ProteinGeneName table in EA quickomics object output

  #15 opened 3 years ago by ferg-0
  1

• sampleMetaFactor default ordering

  #14 opened 3 years ago by ferg-0
  1

• Define factor ordering for character & numerical group variables

  #13 opened 3 years ago by ferg-0
  1

• QC plot of (effective) length versus std of counts/TPM plot

  #12 opened 3 years ago by ferg-0
  1

• make DEG analysis qsubbable

  #11 opened 3 years ago by ferg-0
  1

• EA2DA incompatibility with custom groups

  #10 opened 3 years ago by ferg-0
  1

• Input checking code for QuickOmics_DEG to be put into EArun to execute at start

  #9 opened 3 years ago by ferg-0
  1

• TPM adjustment for numerical variables - working correctly?

  #2 opened 3 years ago by ferg-0
  3

• Rownames field in sample meta table and Var.2 field

  #5 opened 3 years ago by ferg-0
  1

• Put TST number into the title for QuickOmics

  #4 opened 3 years ago by ferg-0
  1

• Splitting compareInfo file with EAsplit

  #3 opened 3 years ago by ferg-0
  1

• Project info csv file when project name has commas

  #1 opened 3 years ago by ferg-0
  1