Pinned Repositories
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
awesome-reproducible-research
A curated list of reproducible research case studies, projects, tutorials, and media
cellxgene_VIP
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
incas
An integrative annotator of human Copy Number Variants using functional genomic features
IntroToGit
Slides and introductiory material for getting started with Git!
momix-notebook
Mowgli
Single-cell multi-omics integration using Optimal Transport
MultiplexDBNet
a Python/based tool for the construction of MultiLayered Networks from publicly available data
pyntacle
A high performance python package for network analysis based on non canonical metrics
pySankey
create sankey diagrams with matplotlib
wariobrega's Repositories
wariobrega/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
wariobrega/awesome-reproducible-research
A curated list of reproducible research case studies, projects, tutorials, and media
wariobrega/cellxgene_VIP
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
wariobrega/incas
An integrative annotator of human Copy Number Variants using functional genomic features
wariobrega/IntroToGit
Slides and introductiory material for getting started with Git!
wariobrega/momix-notebook
wariobrega/Mowgli
Single-cell multi-omics integration using Optimal Transport
wariobrega/MultiplexDBNet
a Python/based tool for the construction of MultiLayered Networks from publicly available data
wariobrega/pyntacle
A high performance python package for network analysis based on non canonical metrics
wariobrega/pySankey
create sankey diagrams with matplotlib
wariobrega/scanpy_usage
Scanpy use cases.
wariobrega/scNET
jupyther notebook comparing reproducibility of single-cell network inference algorithms
wariobrega/scrapcode
compbio notes and unix shell commands
wariobrega/STREAM
STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data
wariobrega/TOPOS
Tissue of Origin Predictor of Onco-Samples
wariobrega/unravel
Plots Meaningful Representations of Complex Networks
wariobrega/wariobrega.github.io