Pinned Repositories
Circe
Co-accessibility network from ATAC-seq data. Python code, based on Cicero package (R).
HuMMuS
Molecular interactions inference from single-cell multi-omics data
momix-notebook
Mowgli
Single-cell multi-omics integration using Optimal Transport
mowgli_reproducibility
Data and scripts to reproduce experiments for Mowgli.
OT-scOmics
This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in between single-cell omics data.
scconfluence
A novel method for single-cell diagonal integration: scConfluence
scNET
jupyther notebook comparing reproducibility of single-cell network inference algorithms
scPRINT
single cell foundation model for Gene network inference and more
scPRINT-temp
Single Cell Pretrained Regulatory network INference from Transcripts
Machine Learning for Integrative Genomics lab's Repositories
cantinilab/momix-notebook
cantinilab/Mowgli
Single-cell multi-omics integration using Optimal Transport
cantinilab/OT-scOmics
This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in between single-cell omics data.
cantinilab/HuMMuS
Molecular interactions inference from single-cell multi-omics data
cantinilab/scconfluence
A novel method for single-cell diagonal integration: scConfluence
cantinilab/scNET
jupyther notebook comparing reproducibility of single-cell network inference algorithms
cantinilab/mowgli_reproducibility
Data and scripts to reproduce experiments for Mowgli.
cantinilab/GRnnData
Awesome GRN enhanced AnnData toolkit
cantinilab/scc_reproducibility
cantinilab/.github
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