yyoshiaki

Bioinformatics

Yale UniversityNew Haven

Pinned Repositories

2022_shinkei_handson
Language:Shell4 2 02
drbono.chap4
Slides for dr.bonobon meeting
Language:Jupyter Notebook20
ikra
RNAseq pipeline centered on Salmon
Language:Shell27 13 3820
MEnet
MEnet is a neural-net based deconvolution method for methylation data.
Language:Python3 1 50
mishima_gassyuku
三島合宿　2019/03/04-09
Language:Jupyter Notebook40
NMFprojection
NMFprojection
Language:Jupyter Notebook4 3 00
screfmapping
Language:R1 1 01
VIRTUS
A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
Language:Common Workflow Language33 4 219
VIRTUS2
A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
Language:Common Workflow Language16 4 396

yyoshiaki's Repositories

yyoshiaki/VIRTUS
A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
Language:Common Workflow Language33 4 219
yyoshiaki/ikra
RNAseq pipeline centered on Salmon
Language:Shell27 13 3820
yyoshiaki/VIRTUS2
A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
Language:Common Workflow Language16 4 396
yyoshiaki/2022_shinkei_handson
Language:Shell4 2 02
yyoshiaki/NMFprojection
NMFprojection
Language:Jupyter Notebook4 3 00
yyoshiaki/MEnet
MEnet is a neural-net based deconvolution method for methylation data.
Language:Python3 1 50
yyoshiaki/AJACS95
1 0 00
yyoshiaki/arcasHLA
Fast and accurate in silico inference of HLA genotypes from RNA-seq
Language:Python1 1 00
yyoshiaki/autoimmune10x_CD4T_Manuscript_2023
Language:Jupyter Notebook1 1 1
yyoshiaki/screfmapping
Language:R1 1 01
yyoshiaki/yyoshiaki.github.io
Language:HTML1 2 00
yyoshiaki/2023_schack
Language:Jupyter Notebook1 0
yyoshiaki/ai_contest_2021
pytorch-based
Language:Jupyter Notebook2 0
yyoshiaki/bismark_sratools_env
Language:Dockerfile2 0
yyoshiaki/BSviz
This project was deprecated.
Language:Jupyter Notebook2 0
yyoshiaki/cellxgene
An interactive explorer for single-cell transcriptomics data
Language:JavaScript0 0
yyoshiaki/cellxgeneVIP-gateway
Language:Shell1 0
yyoshiaki/DLC
Language:Python1 0
yyoshiaki/Dockerfiles
Dockerfiles
Language:R2 0
yyoshiaki/ingest_after_bbknn
Language:Jupyter Notebook2 0
yyoshiaki/ldsc
LD Score Regression (LDSC)
Language:Python1 0
yyoshiaki/leafviz
Just the leafviz parts of Leafcutter
Language:R1 0
yyoshiaki/MEnet_manuscript
Language:Python1 0
yyoshiaki/MG_thymoma_Manuscript_2021
Language:Jupyter Notebook2 0
yyoshiaki/reproduce_json_error
Language:Python1 0
yyoshiaki/rnaseqrecipe_chap1
AnnualUpdate
2 0
yyoshiaki/scDRS
Single-cell disease relevance score (scDRS)
Language:Jupyter Notebook0 0
yyoshiaki/scDRS_example
Language:Jupyter Notebook2 0
yyoshiaki/sclinker-skg
Language:Shell1 1
yyoshiaki/SoloTE
Language:Python0 01