DEG in v1.1.1 ValueError: kth(=####)
dfermin opened this issue · 1 comments
dfermin commented
Hello
I'm trying to use the latest release of cellxgene_VIP (v.1.1.1) with my data which had been working with v.1.0.1.
When I select to regions of cells to do differential analysis I click on DEG and get this error:
ERROR @server: ValueError: kth(=1838) out of bounds (1838).
I've checked and I get this same error with any H5AD object I use.
Do you have solution for how I could fix this?
Thank you.
z5ouyang commented
Hi @dfermin, Thanks for using VIP and report the issue! We checked, and this bug was introduced by trying to improve the illustration of multiomics data. It should be fixed by 25d8b30 and 8b79622. Please pull the latest code and run "update.VIPInterface.sh" under the corresponding env.
Please let us know if it didn't fix the issue!
Thanks!