WeilerP
Ph.D. candidate in Computational Biology and Mathematics at Technical University Munich and Helmholtz Munich.
@theislab
Pinned Repositories
scanpy
Single-cell analysis in Python. Scales to >1M cells.
cellrank
CellRank: dynamics from multi-view single-cell data
scvelo
RNA Velocity generalized through dynamical modeling
anndata
Annotated data.
beetles-tda
Python code for corresponding blog post on Towards Data Science
bioconda-recipes
Conda recipes for the bioconda channel.
cellrank
CellRank for directed single-cell fate mapping
sc_analysis_template
Template repository for analysis of single-cell data and tools.
tradeSeq-py
TRAjectory Differential Expression analysis for SEQuencing data
velovi
WeilerP's Repositories
WeilerP/sc_analysis_template
Template repository for analysis of single-cell data and tools.
WeilerP/tradeSeq-py
TRAjectory Differential Expression analysis for SEQuencing data
WeilerP/anndata
Annotated data.
WeilerP/beetles-tda
Python code for corresponding blog post on Towards Data Science
WeilerP/bioconda-recipes
Conda recipes for the bioconda channel.
WeilerP/cellrank
CellRank for directed single-cell fate mapping
WeilerP/cellrank_notebooks
Tutorials and figures for CellRank
WeilerP/fastai
The fastai deep learning library, plus lessons and tutorials
WeilerP/giotto-learn
A high performance topological machine learning toolbox in Python
WeilerP/moscot
Multi-omic single-cell optimal transport tools
WeilerP/muon
muon is a multimodal omics Python framework
WeilerP/sc-templates
Templates for single-cell pipelines
WeilerP/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
WeilerP/scvelo
RNA Velocity generalized through dynamical modeling
WeilerP/scvelo_notebooks
WeilerP/SEACells
SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
WeilerP/seurat
R toolkit for single cell genomics
WeilerP/spatialdata-notebooks
WeilerP/spectra
Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms
WeilerP/us-election-tda
WeilerP/wot
A software package for analyzing snapshots of developmental processes