Issues
- 1
pl.log_odds() shows no figure
#1216 opened by Alvis-Jiang - 2
heatmap plot: what are the column
#1195 opened by mxposed - 1
plot_random_walks csr_matrix error
#1213 opened by simozhou - 7
- 1
Functsions related to Expression Trend not working
#1207 opened by JyoRoy21 - 4
Problems with g.predict_terminal_states() and g.compute_fate_probabilities()
#1209 opened by kathbosc - 6
Question about metabolic labeling analysis
#1208 opened by mingjianPeng - 4
Pipeline from Seurat object to CellRank
#1204 opened by mainharryHR - 1
plot_single_flow raw data interpretation
#1196 opened by fafa92 - 2
- 1
- 6
How to improve the accuracy for CytoTRACEKernel pipeline? Any parameter I can adjust?
#1206 opened by mainharryHR - 2
Errors for compute_transition_matrix
#1205 opened by mainharryHR - 2
Can key genes be identified?
#1203 opened by GLking123 - 2
Compute and plot gene module scores over pseudotime
#1202 opened by sohrabsa - 1
unable to install cellrank
#1200 opened by jchenpku - 4
CellRank can't be used in Python versions >3.9
#1199 opened by mpiersonsmela - 1
Question about Transition Matrix and Initial States
#1198 opened by jennylsmith - 0
- 13
ValueError: Transition matrix is not row stochastic, 8216 rows do not sum to 1.
#1192 opened by simonekats - 4
Manually adding a macrostate?
#1193 opened by mxposed - 5
A question about ‘g_fwd.compute_fate_probabilities(preconditioner='ilu', tol=1e-7, solver='direct')’
#1194 opened by liuyang218622 - 1
- 1
- 2
BaseModel.prepare() unexpected behaviour
#1152 opened by nrclaudio - 2
Comparing conditions in cellrank
#1181 opened by dyinboisry4u - 10
- 2
3D UMAP and RNA velocity matrices
#1187 opened by fafa92 - 4
- 1
- 3
Update type hinting
#1178 opened by WeilerP - 5
Problem with plotting fate probabilities separately "'NoneType' object has no attribute '_get_renderer'"
#1185 opened by azbukinanadezda - 6
ImportError: cannot import name 'deprecated_arg_names' from 'scanpy._utils' since scanpy 1.10.0 release
#1183 opened by Zethson - 1
Cellrank - CytoTRACE Kernel with Harmony results
#1180 opened by xiandxing - 1
Plot states as in CellRank 2
#1176 opened by WeilerP - 5
Inverse-squared link error
#1170 opened by loicguille - 0
Cross-boundary correctness score
#1167 opened by WeilerP - 1
Test CI fail with `pytest==8.1.0`
#1173 opened by WeilerP - 0
Add terminal state identification score
#1165 opened by WeilerP - 0
- 0
Heatmap title
#1159 opened by WeilerP - 1
Is there a way to remove the legend in cr.pl.gene_trends ?
#1169 opened by t-nol - 0
Check that genes to plot in heatmap exist
#1161 opened by WeilerP - 0
Ignore VS Code files
#1163 opened by WeilerP - 3
vk.compute_transition_matrix() gives zero-size array to reduction operation not possible
#1158 opened by leahrosen - 3
Available GPU support in CellRank 2?
#1151 opened by zvittorio - 2
Compatibility problems with python >=3.10
#1153 opened by PaMartini - 4
Enrichment analysis with pearson correlations
#1155 opened by TdzBAS - 2
- 5
Why are my fate probabilities so low in the heatmap?
#1154 opened by TdzBAS