rna-velocity
There are 23 repositories under rna-velocity topic.
aristoteleo/dynamo-release
Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
theislab/cellrank
CellRank: dynamics from multi-view single-cell data
basilkhuder/Seurat-to-RNA-Velocity
A guide to using a Seurat object in conjunction with RNA Velocity
GuangyuWangLab2021/cellDancer
Predict RNA velocity through deep learning
kevinrue/velociraptor
Toolkit for Single-Cell Velocity
pinellolab/pyrovelocity
𝒫robabilistic modeling of RNA velocity ⬱
calico/velodyn
Dynamical systems methods for RNA velocity analysis
aristoteleo/dynast-release
Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments
StatBiomed/SingleCell-Workshop-2021
Module 4 for HKU Single-cell Workshop
TheJacksonLaboratory/STQ
Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images
aron0093/cytopath
Simulation based inference of differentiation trajectories from RNA velocity fields.
jr-leary7/scLANE
Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.
huangyh09/brie-tutorials
Tutorials for using BRIE
theimagelab/entrain
Entrain: Predicting Environmental Regulators of Differentiation Trajectories
sqjin/nlvelo
R pacakge for RNA velocity estimation with nonlinear models
hisplan/docker-velocyto
Dockerized Velocyto for RNA Velocity
mcrewcow/RGC_Dnmt3a_pONC2d_paper
Retinal ganglion cells regeneration in 2 days post optic nerve crush retina | Lydia Tai | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School
mayurdoke6/Longitudinal-scRNAseq-of-human-pancreatic-slices
This repository contains coding scripts utilized for the analysis of Longitudinal scRNAseq of human pancreatic slices datasets
mcrewcow/ChaginLab
Growth Hormone effect on Cartilage Growth Plate; Light-Sheet Microscopy; Pseudocoloring | Projects I started and still working on in Andrei Chagin Lab | Karolinska Institutet
mcrewcow/Pan_et_al_DFChen_IGFPL1_paper
IGFBPL1 Retinal Microglia Project | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School
mcrewcow/Sun_Ye_microglia_macrophages_paper
Socs3/Spp1 Project on Microglia in OIR | Ye Sun Lab Collaboration Project | Boston Children's Hospital
hisplan/velopipe
RNA Velocity for SEQC
mcrewcow/Yizhen_microglia
collab | DFC