basilkhuder/Seurat-to-RNA-Velocity

Issues

• ValueError: Value passed for key 'X_umap' is of incorrect shape. Values of obsm must match dimensions (0,) of parent.

  #24 opened 3 months ago by Kalpi-ds
  0

• general question embedding projection

  #23 opened 7 months ago by TdzBAS
  0

• errors when running kb count

  #22 opened a year ago by Sunyp-IM
  0

• Fail to install velocyto

  #21 opened a year ago by sjwu571
  0

• error merging Index data frame with UMAP

  #20 opened a year ago by coolmak32
  0

• How to run velocyto/RNA-velcocity of a subset

  #19 opened 2 years ago by jeanne09jiang
  0

• Kallisto Bustools "Failed to find compatible kallisto binary."

  #17 opened 2 years ago by SimoniMD
  2

• Index splitting and specifying index for kb count

  #18 opened 2 years ago by retropc66
  0

• Multiple-Sample Integration for filtering cell ID based off Seurat

  #9 opened 3 years ago by cfayx1996
  6

• Question about the loom file

  #16 opened 3 years ago by yzhou666
  0

• Error: /lib64/libm.so.6: version `GLI BC_2.29' not found

  #15 opened 3 years ago by SinhaI
  0

• Getting AssertionError in scv.pp.moments

  #8 opened 3 years ago by hangnguyen229
  7

• Imported tSNE coordintes not being read!

  #14 opened 3 years ago by AAA-3
  0

• raise ValueError"cannot reindex from a duplicate axis"

  #11 opened 3 years ago by wenyl1919
  3

• Variable names are not unique and 'cellID_obs' is not defined

  #13 opened 3 years ago by AAA-3
  2

• Fail to filter loom by CellID extracted from Seurat

  #4 opened 4 years ago by rtoddler
  9

• ValueError: cannot reindex from a duplicate axis when merge.

  #5 opened 3 years ago by akui113
  5

• Any idea about the multiple sample looms to integrated by loompy.combine function?

  #10 opened 3 years ago by honghh2018
  1

• Mention velociraptor package

  #7 opened 3 years ago by friedue
  1

• 10x 5 prime data

  #6 opened 3 years ago by JenniferWUSTL
  0

• Failed to incorprate colors with "color = sample_one.uns['Cluster_colors']"

  #3 opened 4 years ago by Flyingcattle
  4

• high unspliced counts by velocyto

  #2 opened 4 years ago by rtoddler
  4

• seurat object to RNA velocity question

  #1 opened 4 years ago by skim245
  15