Pinned Repositories
SCENIC
SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
scFEA
single cell Flux Estimation Analysis (scFEA) Try the below web server!
SComatic
A tool for detecting somatic variants in single cell data
ecotyper
EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
SEACells
SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
cNMF
Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
vcf2phylip
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
SeuratExtend
Effect-of-elevated-CO2-on-soil-denitrification
Original data for a meta-analysis on investigating the effect of elevated CO2 on soil denitrification
cellrank
CellRank: dynamics from multi-view single-cell data
LiuCanidk's Repositories
LiuCanidk/Effect-of-elevated-CO2-on-soil-denitrification
Original data for a meta-analysis on investigating the effect of elevated CO2 on soil denitrification