Issues
- 2
- 1
The data cannot be downloaded
#63 opened by cfzgg - 0
CUDA error while running "model.fit"
#66 opened by NekoClaviS - 0
Spurious metacell
#65 opened by yxsee - 0
Circular import and GPU version
#62 opened by GLking123 - 0
- 0
maxFragmentLength=147
#60 opened by Aya-Balbaa - 0
Custom Neighborhood Graph for Metacells
#59 opened by shahrozeabbas - 2
Fail to install seacells via conda due to conflicts in environment.yaml
#52 opened by ChangSuBiostats - 1
- 3
Way too strict dependency pins
#39 opened by Zethson - 4
Issue with model.initialize_archetypes()
#41 opened by iamsalil - 0
- 1
- 2
Reproducibility issue
#48 opened by evaham1 - 0
- 0
[Question] Algorithm for PWM computation
#53 opened by josephineyates - 3
Cannot initialize_archetypes
#30 opened by GuiSeSanz - 1
Computing SEACells on individual samples
#40 opened by learning-MD - 1
cell-cell affinity matrix
#49 opened by ytliu01 - 0
Add pre-commit hooks
#44 opened by WeilerP - 1
Many cells have zero non-trivial (>0.1) assignments
#43 opened by simozhou - 1
PWM for mouse genome
#47 opened by torkencz - 1
The data cannot be downloaded
#50 opened by hai178912522 - 1
Renaming the Seacells
#46 opened by Gavin-Lijy - 12
model.fit hangs indefinitely
#18 opened by smorabit - 10
MemoryError when fitting model.fit
#34 opened by tatyana-perlova - 2
- 0
- 2
- 3
ValueError: row, column, and data array must all be the same length when running model.fit
#37 opened by tatyana-perlova - 1
gene score matrix with sparse format
#23 opened by fl-yu - 0
- 4
Issue with cupyx
#31 opened by jindalk - 2
Save Model
#26 opened by Sayyam-Shah - 4
Peak calling on NFR fragments
#35 opened by ivanferrreira - 1
Reproducible example for the PBMC dataset
#32 opened by lebf3 - 3
Issues of model.initialize_archetypes
#21 opened by fl-yu - 1
R version of SEACells
#33 opened by zji90 - 1
- 1
SeaCells analysis for each cell type
#25 opened by fl-yu - 4
Multiome Dataset
#22 opened by Sayyam-Shah - 1
peak calling for each metacell
#20 opened by fl-yu - 1
Type checking needed in initialize_archetypes
#17 opened by smorabit - 3
Local paths in requirements.txt
#15 opened by maxim-h - 4
- 2
SEACells on integrated dataset
#13 opened by mainciburu - 5
- 1
Plotting functions cannot be silenced
#11 opened by PauBadiaM - 1