Pinned Repositories
ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
aur
Custom PKGBUILD's for various Arch packages
based.cooking
A simple culinary website.
bi-kho1-2024
bi-kho2-2024
Looking into cell calling in SUMseq
bioinfcont19
bioseq
BoneMarrowMap
A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic stem and progenitor cells and differentiated populations
chempred
Character-level RNN for tagging chemical entities in unparsed text.
fragments_to_sam
Small converter between bgzf fragment file and SAM stdout
maxim-h's Repositories
maxim-h/bi-kho2-2024
Looking into cell calling in SUMseq
maxim-h/fragments_to_sam
Small converter between bgzf fragment file and SAM stdout
maxim-h/ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
maxim-h/aur
Custom PKGBUILD's for various Arch packages
maxim-h/based.cooking
A simple culinary website.
maxim-h/bi-kho1-2024
maxim-h/BoneMarrowMap
A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic stem and progenitor cells and differentiated populations
maxim-h/dropestr
Preprocessing of Droplet-based Single-Cell RNA-seq Data
maxim-h/dwm
Luke's build of dwm
maxim-h/dwmblocks
My status bar: my build of the modular dwmblocks
maxim-h/exercism_solutions
my exercism stuff
maxim-h/FLAMES
Full-length transcriptome splicing and mutation analysis
maxim-h/FLAMES-1
A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.
maxim-h/init.lua
maxim-h/misc
Miscellaneous bioinformatics and general unix tools
maxim-h/muon
muon is a multimodal omics Python framework
maxim-h/prop_violin
maxim-h/pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
maxim-h/python-intermediate-development
Intermediate Research Software Development Skills In Python Lesson Material
maxim-h/scriabin
Analysis of cell-cell communication at single-cell resolution
maxim-h/seurat
R toolkit for single cell genomics
maxim-h/seurat-object
maxim-h/ShinyCell
Shiny Interactive Web Apps for Single-Cell Data
maxim-h/signac
R toolkit for the analysis of single-cell chromatin data
maxim-h/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
maxim-h/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
maxim-h/souporcell
Clustering scRNAseq by genotypes
maxim-h/SoupX
R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
maxim-h/st
Luke's fork of the suckless simple terminal (st) with vim bindings and Xresource compatibility.
maxim-h/telekasten.nvim
A Neovim (lua) plugin for working with a markdown zettelkasten / wiki and mixing it with a journal, based on telescope.nvim