dpeerlab/SEACells

Way too strict dependency pins

Zethson opened this issue · 3 comments

Zethson commented

Hi,

the dependencies pinned in https://github.com/dpeerlab/SEACells/blob/main/requirements.txt are way too strict and it is not possible to add SEACells to another Python package that has a few other scverse tools. Please unpin them (e.g. cython, anndata, h5py, ...)

vitkl commented

Same here. I need to install SEACells without dependencies pip install .... --no-deps to prevent updates of already installed packages, or to install SEACells if a fresh conda environment and then install other packages like scvi-tools and cell2location.

sitarapersad commented

Ahh yes, sorry about that! I will remove the extra dependencies and test it out this week. Will update this soon!

  • 👍1
shahrozeabbas commented

@vitkl Can you confirm that SEACells works with latent embeddings from scvi?