Zethson

PhD student at @theislab. Co-founder @scverse. Research software engineer @laminlabs

@theislab @scverse @laminlabsGermany

Pinned Repositories

cookietemple
A collection of best practice cookiecutter templates for all domains and languages with extensive Github support ⛺
Language:Python153 6 2818
mlf-core
CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.
Language:Python45 2 1083
mhcquant
Identify and quantify MHC eluted peptides from mass spectrometry raw data
Language:Nextflow30 80 7724
ehrapy
Electronic Health Record Analysis with Python.
Language:Python128 5 28316
pertpy
Perturbation Analysis in the scverse ecosystem.
Language:Python87 4 19918
single-cell-best-practices
https://www.sc-best-practices.org
Language:Jupyter Notebook671 18 175148
dowhy
DoWhy is a Python library for causal inference that supports explicit modeling and testing of causal assumptions. DoWhy is based on a unified language for causal inference, combining causal graphical models and potential outcomes frameworks.
Language:Python10
fknni
Lightning fast KNN imputation
Language:Python42
guide-seq-container
Language:Dockerfile1 5 31
igem_tuebingen_website
igem-tuebingen.com
Language:HTML5 4 473

Zethson's Repositories

Zethson/igem_tuebingen_website
igem-tuebingen.com
Language:HTML5 4 473
Zethson/fknni
Lightning fast KNN imputation
Language:Python42
Zethson/dowhy
DoWhy is a Python library for causal inference that supports explicit modeling and testing of causal assumptions. DoWhy is based on a unified language for causal inference, combining causal graphical models and potential outcomes frameworks.
Language:Python10
Zethson/guide-seq-container
Language:Dockerfile1 5 31
Zethson/lukas_heumos_website
Language:HTML1 1 00
Zethson/MHCBoost
Language:Python1 2
Zethson/promoe
Language:Python1 0
Zethson/PyDESeq2
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
Language:Python
Zethson/test-gpu-ci
1 02
Zethson/zethson
2 01