theislab/ehrapy

Issues

• figure settings not properly passed through

  #760 opened a month ago by Zethson
  0

• Check ehrapy compatibility with Python 3.12

  #786 opened a month ago by Zethson
  0

• Maintenance: `uv` causes readthedocs build to fail

  #766 opened a month ago by eroell
  1

• Visualization of CoxPH models

  #743 opened 7 months ago by mhaist94
  1

• Miscallenous doc enhancements

  #811 opened 2 months ago by eroell
  1

• Pip install not working

  #810 opened 2 months ago by alezenonos
  3

• Master issue repeated measurements

  #805 opened 3 months ago by eroell
  0

• Encoding consistency with imputations

  #807 opened 3 months ago by nicolassidoux
  0

• implement a "ts.filter_features()"

  #809 opened 2 months ago by eroell
  0

• Draft good integration with pypots

  #806 opened 3 months ago by eroell
  0

• Investigate whether current KNN imputation default (FKNNI) works for all sparseness and AnnData objects

  #803 opened 3 months ago by Zethson
  2

• pp.mice_forest_impute fails with newest version of miceforest

  #799 opened 4 months ago by nicolassidoux
  0

• First call to built-in datasets fails

  #796 opened 4 months ago by nicolassidoux
  1

• Add tests for pass through calls of scanpy functions

  #792 opened 4 months ago by eroell
  1

• Impossible to calculate UMAP with custom connectivities keys

  #789 opened 4 months ago by VladimirShitov
  2

• Multiple imputation methods: Performance

  #782 opened 5 months ago by eroell
  6

• Unnecessary underscores in the documentation

  #784 opened 5 months ago by VladimirShitov
  1

• Add approximate KNN backend

  #759 opened 7 months ago by eroell
  1

• tableone release 0.9.0 raises error on a common usecase for us

  #752 opened 6 months ago by eroell
  1

• Scipy restriction for lifelines

  #764 opened 6 months ago by eroell
  0

• Scanpy restriction 1.10.1

  #765 opened 6 months ago by eroell
  0

• Import error "cannot import name 'AnyRandom' from 'scanpy._utils'"

  #776 opened 6 months ago by safoora174
  2

• Add new refuters

  #769 opened 6 months ago by timtreis
  0

• out-of-core tutorial

  #750 opened 6 months ago by eroell
  0

• twine!=5.1.0 restriction in .github/workflows/build.yml

  #768 opened 6 months ago by eroell
  1

• normalization functions with dask

  #762 opened 6 months ago by eroell
  0

• UK or US spelling or both for functions

  #740 opened 7 months ago by eroell
  0

• knn_imputation with backend='faiss' can fail to impute values without raising a warning

  #734 opened 7 months ago by eroell
  0

• Support all csv separators

  #755 opened 7 months ago by Zethson
  0

• Extended Table 1

  #747 opened 7 months ago by mhaist94
  2

• Adjusted survival curves

  #746 opened 7 months ago by mhaist94
  0

• Correlation plot for variable dependencies

  #745 opened 7 months ago by mhaist94
  0

• Multivariate and regularized CoxPH models

  #744 opened 7 months ago by mhaist94
  0

• Enhancing KM plot data depth and functionality

  #742 opened 7 months ago by mhaist94
  1

• Extract metadata in conf.py

  #731 opened 7 months ago by Zethson
  0

• Pip install for recent version 0.8.0 reports wheel building error

  #738 opened 7 months ago by mhaist94
  5

• ImportError: cannot import name '_get_column_indices' from 'sklearn.utils for pre-release CI in imbalanced learn

  #718 opened 7 months ago by Zethson
  2

• df to anndata columns_obs_only and index_column cannot be supplied at the same time

  #733 opened 7 months ago by Zethson
  0

• Harmonize feature type detection

  #701 opened 8 months ago by Lilly-May
  1

• To automate or not to automate infer_feature_types?

  #720 opened 8 months ago by Zethson
  3

• Add support for sns.catplot

  #723 opened 8 months ago by eroell
  0

• Update cohort tracker examples

  #709 opened 8 months ago by Zethson
  0

• Use __all__ for public interfaces

  #689 opened 8 months ago by Zethson
  0

• read only file systems and example data download

  #699 opened 8 months ago by bio-la
  1

• Distinguish between ordinal and nominal categorical feature types

  #713 opened 8 months ago by Lilly-May
  0

• Allow for normalization per covariate category

  #710 opened 8 months ago by eroell
  0

• FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas in feature_importances

  #703 opened 8 months ago by Zethson
  0

• Minor warnings for feature importance + test module

  #691 opened 9 months ago by Zethson
  0

• Consider adding highly variable features to the QC method

  #693 opened 9 months ago by Zethson
  0

• Legend subtitles for CohortTracker's plot_cohort_barplot

  #687 opened 9 months ago by eroell
  0