Pinned Repositories
anndata
Annotated data.
cellrank
CellRank: dynamics from multi-view single-cell data. See the docs:
CommonDataModel
Definition and DDLs for the OMOP Common Data Model (CDM)
CoMP
CoMP: Contrastive Mixture of Posteriors
ehrapy
Electronic Health Record Analysis with Python.
ehrapy-tutorials
Tutorials for ehrapy
ellis-summerschool
fknni
Lightning fast KNN imputation
GeneticRelatedness
imbalanced-learn
A Python Package to Tackle the Curse of Imbalanced Datasets in Machine Learning
eroell's Repositories
eroell/anndata
Annotated data.
eroell/cellrank
CellRank: dynamics from multi-view single-cell data. See the docs:
eroell/CommonDataModel
Definition and DDLs for the OMOP Common Data Model (CDM)
eroell/CoMP
CoMP: Contrastive Mixture of Posteriors
eroell/ehrapy
Electronic Health Record Analysis with Python.
eroell/ehrapy-tutorials
Tutorials for ehrapy
eroell/ellis-summerschool
eroell/fknni
Lightning fast KNN imputation
eroell/imbalanced-learn
A Python Package to Tackle the Curse of Imbalanced Datasets in Machine Learning
eroell/mudata
Multimodal Data (.h5mu) implementation for Python
eroell/muon-tutorials
Tutorials for multimodal omics data analysis
eroell/pertpy
Perturbation Analysis in the scverse ecosystem.
eroell/pertpy-tutorials
eroell/cookiecutter-scverse
Cookiecutter template for scverse
eroell/lamindb
A data framework for biology.
eroell/mypackage-cruft-oct
eroell/PathomicFusion
Fusing Histology and Genomics via Deep Learning - IEEE TMI
eroell/PyPOTS
A Python toolkit/library for reality-centric machine/deep learning and data mining on partially-observed time series, including SOTA neural network models for scientific analysis tasks of imputation, classification, clustering, forecasting, & anomaly detection on incomplete industrial (irregularly-sampled) multivariate TS with NaN missing values
eroell/scanpy
Single-cell analysis in Python. Scales to >1M cells.
eroell/scimb
eroell/scTab
eroell/scverse-tutorials
Tutorials for learning scverse
eroell/scvi-tools
Deep probabilistic analysis of single-cell omics data
eroell/seurat
R toolkit for single cell genomics
eroell/simbsig
The official implementation for the SIMBSIG package
eroell/simpletool
eroell/single-cell-best-practices
https://www.sc-best-practices.org
eroell/squidpy
Spatial Single Cell Analysis in Python
eroell/TSDB
a Python toolbox loads 172 public time series datasets for machine/deep learning with a single line of code. Datasets from multiple domains including healthcare, financial, power, traffic, weather, and etc.
eroell/vitessce-python
Python API and Jupyter widget for Vitessce