read only file systems and example data download
bio-la opened this issue · 1 comments
bio-la commented
Report
adata = ep.dt.diabetes_130_raw(encoded=False)
[...]
OSError: [Errno 30] Read-only file system: '/ehrapy_data'
maybe add info how to prepare the project directory for download?
Version information
anndata 0.10.7
ehrapy 0.7.0
matplotlib 3.8.4
pandas 2.2.2
seaborn 0.13.2
session_info 1.0.0
PIL 10.3.0
appnope 0.1.4
asttokens NA
autograd NA
autograd_gamma NA
bs4 4.12.3
cachetools 5.3.3
category_encoders 2.6.3
causallearn NA
certifi 2024.02.02
charset_normalizer 3.3.2
comm 0.2.2
cvxopt 1.3.2
cycler 0.12.1
cython_runtime NA
dateutil 2.9.0
db_dtypes 1.2.0
...
Python 3.10.14 | packaged by conda-forge | (main, Mar 20 2024, 12:53:34) [Clang 16.0.6 ]
macOS-14.4.1-x86_64-i386-64bit
eroell commented
Hm, the ehrapy_data directory should typically be generated with not just read permissions
The way to solve on unix would be to go to the ehrapy directory and there do chmod +wx ehrapy_data.
Not sure under what circumstances read-only permissions are set to this created directory