jindalk

PhD student. Interested in cell fate and genomic technologies

@morris-labWashington University School of Medicine

Pinned Repositories

newCloneCalling
Repository detailing updated allowlisting and clonal analysis workflow
Language:Python70
CellTag-multi-2023
Repository for scirpts to re-produce all major analyses in the CellTag-multi paper
Language:Jupyter Notebook20
CellTagR
This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.
Language:R199
codeSnippets
Useful code snippets for data analysis
00
cicero-release
Language:R00
CoolBox
Jupyter notebook based genomic data visualization toolkit.
Language:Python00
nanobody
Nanobody-tethered transposition followed by sequencing
Language:R00
practical-python
Practical Python Programming (course by @dabeaz)
Language:Python00
pybedtools
Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)
Language:Python00
scim
Code for Universal Single-Cell Matching with Unpaired Feature Sets
Language:Jupyter Notebook00

jindalk's Repositories

jindalk/codeSnippets
Useful code snippets for data analysis
jindalk/nanobody
Nanobody-tethered transposition followed by sequencing
Language:R
jindalk/spectra
Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms
jindalk/pybedtools
Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)
jindalk/CoolBox
Jupyter notebook based genomic data visualization toolkit.
jindalk/scim
Code for Universal Single-Cell Matching with Unpaired Feature Sets
jindalk/practical-python
Practical Python Programming (course by @dabeaz)
jindalk/cicero-release