morris-lab

Pinned Repositories

BiddyetalWorkflow
This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.
Language:R28 5 611
Capybara
Capybara: A computational tool to measure cell identity and fate transitions
Language:R53 4 1910
CellOracle
This is the alpha version of the CellOracle package
Language:Python291 7 19649
CellOracle.documentation
Language:Jupyter Notebook3 1 00
CellTag-Classifier
Language:HTML6 4 01
CellTag-multi-2023
Repository for scirpts to re-produce all major analyses in the CellTag-multi paper
Language:Jupyter Notebook20
CellTagR
This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.
Language:R18 5 259
Colony-counter
Python package for the quantificatin of number of colonies
Language:Jupyter Notebook15 1 19
newCloneCalling
Repository detailing updated allowlisting and clonal analysis workflow
Language:Python7 0 10
PreviousCloneHunter
This repository contains our CellTag CloneHunter R package for clone-calling.
Language:R6 3 42

morris-lab's Repositories

morris-lab/CellOracle
This is the alpha version of the CellOracle package
Language:Python291 7 19649
morris-lab/Capybara
Capybara: A computational tool to measure cell identity and fate transitions
Language:R53 4 1910
morris-lab/BiddyetalWorkflow
This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.
Language:R28 5 611
morris-lab/CellTagR
This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.
Language:R18 5 259
morris-lab/Colony-counter
Python package for the quantificatin of number of colonies
Language:Jupyter Notebook15 1 19
morris-lab/newCloneCalling
Repository detailing updated allowlisting and clonal analysis workflow
Language:Python7 0 10
morris-lab/CellTag-Classifier
Language:HTML6 4 01
morris-lab/PreviousCloneHunter
This repository contains our CellTag CloneHunter R package for clone-calling.
Language:R6 3 42
morris-lab/CellOracle.documentation
Language:Jupyter Notebook3 1 00
morris-lab/CellTag-multi-2023
Repository for scirpts to re-produce all major analyses in the CellTag-multi paper
Language:Jupyter Notebook20
morris-lab/adipogenesis-reproducibility-repo
Relevant data and code for reproducing analysis of in vivo lineage tracing adipocyte precursors in skin
Language:Jupyter Notebook1
morris-lab/Capybara_reproducibility
Reproducibility Repository for Capybara
Language:HTML10
morris-lab/CellOracle_streamlit
Codes for celloracle web application
Language:Python10
morris-lab/CellTagViz
Repository of the CellTag Viz Shiny App
Language:HTML1 3 00
morris-lab/CellTagViz-package
Language:HTML1 1 00
morris-lab/CellTag-Titration
Imaging-based titration software for GFP-Celltag lentivirus
Language:Jupyter Notebook0 2 00