dpeerlab/SEACells

Different metacells gained when repeating analysis on same data set

marie3003 opened this issue · 1 comments

Hi,
thanks again for your package:).

I've noticed that whenever I run the metacell calculation on the same dataset, I get different initialized archetypes and because of that different metacells. I tried to add a random seed via numpy in the notebook but I'm still getting varying results.

Do you provide a solution for that I've overseen?
Thanks a lot and best regards,
Marie

Hello there - we are trying to figure this out. In the meantime, you could save the initial set of points and use as input to the second run which should reproduce the results.