Pinned Repositories
MAGIC
MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.
ChIPKernels
ChIPKernels is an R package for building different string kernels used for DNA Sequence analysis.
dynmethods
A collection of over 40 trajectory inference methods within a common interface
glmpca-py
generalized principal component analysis (GLM-PCA) implemented in python
ManuSetty.github.io
Personal website
Palantir
Single cell trajectory detection
scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
SEACells
SeqGL
SeqGL is a group lasso based algorithm to extract TF sequence signals from ChIP, DNase and ATAC-seq profiles
wishbone
Wishbone is an algorithm to align cells along developmental trajectories with branches
ManuSetty's Repositories
ManuSetty/wishbone
Wishbone is an algorithm to align cells along developmental trajectories with branches
ManuSetty/Palantir
Single cell trajectory detection
ManuSetty/SeqGL
SeqGL is a group lasso based algorithm to extract TF sequence signals from ChIP, DNase and ATAC-seq profiles
ManuSetty/dynmethods
A collection of over 40 trajectory inference methods within a common interface
ManuSetty/ChIPKernels
ChIPKernels is an R package for building different string kernels used for DNA Sequence analysis.
ManuSetty/glmpca-py
generalized principal component analysis (GLM-PCA) implemented in python
ManuSetty/ManuSetty.github.io
Personal website
ManuSetty/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
ManuSetty/SEACells