dpeerlab/SEACells

Local paths in requirements.txt

Opened this issue · 3 comments

I've noticed that requirements.txt mostly consists of @ file references, so it's not really usable.

Would be nice to have it since I don't use conda for this.

Also, there was this line:

legacy-api-wrap==0.0.0

After removing ==0.0.0, removing all the @ file parts, removing backports.zoneinfo (because it's not needed and broken under python 3.10) and installing fa2 from source the install have worked.

P.S.: without the pip install -r requirements.txt step setup.py was breaking down in a way more complicated way to resolve.

Thanks for the tip! @sitarapersad Can you please update the requirements.txst

No problem)
Just to clarify, environment.yaml specifies python=3.8, so I guess that's the supported one. Most of the problems here were related to me using pip (with venv in my case) and a newer python version. But maybe it will be useful for people doing the same.