Pinned Repositories
cell2location
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
DeepVelo
spacexr
Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics
CellOracle
This is the alpha version of the CellOracle package
pyGPCCA
pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov State Models.
omicverse
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
cellrank
CellRank: dynamics from multi-view single-cell data
CEFCON
Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
TFvelo
Roger-GOAT's Repositories
Roger-GOAT/pyGPCCA
pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov State Models.