Starlitnightly/omicverse

Issues

• Error for ov.utils.cal_paga and ov.single.pyVIA

  #86 opened a month ago by looppy95
  6

• H should have the same dtype as X. Got H.dtype = float32.

  #85 opened a month ago by christophechu
  2

• Added argument description of space function

  #81 opened a month ago by Starlitnightly
  0

• Added argument descriptions to all functions in the single directory

  #84 opened a month ago by Starlitnightly
  0

• Request for bulk count to CPM/TPM/FPKM function

  #83 opened a month ago by erwusht
  1

• Added GPTCelltype

  #82 opened a month ago by Starlitnightly
  0

• module 'omicverse.pl' has no attribute 'contour'

  #80 opened a month ago by christophechu
  1

• ov.pp.qc() Error

  #77 opened 2 months ago by czy1238677
  2

• pip installation error

  #79 opened a month ago by panyiling
  0

• Gene set enrichment analysis error : Exception: No gene sets passed through filtering condition

  #76 opened 2 months ago by asd519627326
  0

• Installation Win

  #75 opened 2 months ago by RubyLiu206
  4

• Conflict on scanpy and omicverse

  #74 opened 2 months ago by yifanfu01
  2

• A problem about batch correction in single-cell-tutorial's code

  #54 opened 2 months ago by DestinyXuanQAQ
  4

• Encounter Error When Installing OmicVerse on Ubuntu 22.04 [Preparing metadata (setup.py) ... error]

  #65 opened 2 months ago by michael-yuyuan
  12

• Error in enrich_res=gsea_obj.enrichment()

  #59 opened 2 months ago by erwusht
  2

• DEG plot_volcano KeyError: 'explode'

  #53 opened 2 months ago by wanglifangelena
  4

• defined order for the plot of groups

  #41 opened 2 months ago by xflicsu
  1

• Bulk Analysis about DiffAnalysis using Omicverse

  #43 opened 2 months ago by GrazieT
  3

• implement other GPU based package to handel large scale cells (>1 million)

  #38 opened 2 months ago by xflicsu
  1

• LibMambaUnsatisfiableError when installing omicverse on win-64

  #73 opened 2 months ago by kakkboy
  2

• Installation Recommendation for people using Conda or pip

  #60 opened 5 months ago by mugpeng
  2

• Sample (dataset) question in the tutorial

  #72 opened 2 months ago by asd519627326
  2

• Encounter Error When Installing OmicVerse on Debian10.7.0

  #71 opened 2 months ago by asd519627326
  0

• LibMambaUnsatisfiableError: Encountered problems while solving

  #70 opened 2 months ago by pickingastar
  2

• Where is the function ov.pl.cellproportion?

  #64 opened 3 months ago by christophechu
  2

• Error on Python 3.12: module 'pkgutil' has no attribute 'ImpImporter'. Did you mean: 'zipimporter'?

  #67 opened 3 months ago by sq-shuqian
  1

• KeyError: 'None is not a known colormap name'

  #69 opened 3 months ago by Donbbit
  1

• Could not show the pictures after run the code "ov.utils.embedding" in WSL2

  #51 opened 3 months ago by DestinyXuanQAQ
  1

• Some errors when i pip this package

  #42 opened 3 months ago by chulexuexibiedebushihewo
  2

• ValueError: cannot reshape array of size 87692 into shape (1993,) in ov.bulk2single.Bulk2Single

  #23 opened 3 months ago by Jessica1525809
  6

• standardized data after batch effects removal by Harmony

  #22 opened 3 months ago by faker1c
  4

• Issue Regarding Survival Analysis

  #68 opened 3 months ago by xianjieshen
  2

• More complete gene ensembl id -> hgnc symbol pairs table

  #66 opened 3 months ago by ElderMedic
  1

• bug in survial_init

  #62 opened 5 months ago by aopisco
  1

• How to get the filtered dataframe with dds.foldchange_set?

  #58 opened 5 months ago by erwusht
  2

• Error pathway enrichment figure by using ov.bulk.geneset_plot

  #55 opened 5 months ago by wanglifangelena
  1

• presence of down regulated genes in the pathway analysis with AUCell

  #33 opened 8 months ago by khanthanan
  2

• To do list in the version of `1.5.2`

  #32 opened 5 months ago by Starlitnightly
  0

• Some suggestions about OV

  #48 opened 6 months ago by lisch7
  8

• A question about the existence of randomness in OV computed metacells

  #49 opened 6 months ago by Doctorluka
  6

• Actually,not retain only the highest expressed gene

  #45 opened 6 months ago by user-tq
  1

• A problem about the TCGA survival analysis

  #46 opened 6 months ago by CocoGzh
  1

• scikit-learn module conflicts

  #44 opened 6 months ago by lisch7
  1

• Inquiry about Preprocessing with Specific Gene Exclusion Based on "Liver tumour immune microenvironment subtypes and neutrophil heterogeneity" Study

  #39 opened 6 months ago by lisch7
  1

• Exponential Increase in Data Size After Single-cell Data Processing with OV

  #37 opened 7 months ago by lisch7
  1

• TypeError: enrichr() got an unexpected keyword argument 'description'

  #24 opened 8 months ago by hslwillion
  2

• Code correction

  #26 opened 8 months ago by mugpeng
  1

• ERROR: Could not build wheels for pybedtools, which is required to install pyproject.toml-based projects

  #28 opened 8 months ago by lili03080317
  0

• TCGA module survial_init error

  #20 opened a year ago by libmelo
  1

• can't plot the figure

  #18 opened a year ago by asdChenJin
  2