defined order for the plot of groups
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xflicsu commented
We may need to the defined order of groups, when we plot with 'plot_cellproportion' in OV.
So, could you provide a parameter for the order of groups?
Starlitnightly commented
Hi,
Thank you for your suggestion. You can use the following code to adjust the order of groups using adata.obs['major_celltype'].cat.reorder_categories
:
adata.obs['major_celltype'] = adata.obs['major_celltype'].cat.reorder_categories(['B cells', 'T cells', 'Plasma',
'Macro', 'Mono', 'Mast', 'DC',
'Principal cell', 'Podocyte',
'Proximal tubular cell',
'Distal tubular cell',
'Loop of Henle cell',
'Intercalated cell', 'Fibro', 'Tumor/TECs'])
Feel free to let me know if you have any more questions!
Zehua