omics
There are 201 repositories under omics topic.
hujingshuang/MTrans
Multi-source Translation
flowhub-team/awesome-omics
A collection of awesome things regarding all omics.
Starlitnightly/omicverse
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
mixOmicsTeam/mixOmics
Development repository for the Bioconductor package 'mixOmics '
bigomics/omicsplayground
Visual self-service analytics platform for big omics data.
rajewsky-lab/openst
Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab
pachterlab/voyager
From geospatial to spatial -omics
jpquast/protti
Picotti lab data analysis package.
biocore/gneiss
compositional data analysis toolbox
fraenkel-lab/OmicsIntegrator2
Prize-Collecting Steiner Forests for Interactomes
ursgal/ursgal
Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
johon-lituobang/MD
Matrix dissimilarity from the differences of Moments and sparsity
kstawiski/OmicSelector
OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.
shenwanxiang/bidd-aggmap
Jigsaw-like AggMap: A Robust and Explainable Multi-Channel Omics Deep Learning Tool
KatrionaGoldmann/volcano3D
An R package to plot interactive three-way differential expression analysis
abbvie-external/OmicNavigator
Open-Source Software for Omic Data Analysis and Visualization
cafferychen777/MicrobiomeStat
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
selbouhaddani/OmicsPLS
R package for High dimensional data analysis and integration with O2PLS!
MannLabs/OmicLearn
🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
scverse/Muon.jl
Muon for Julia
NFDI4Microbiota/nfdi4microbiota-knowledge-base
The NFDI4Microbiota Knowledge Base
ginkgobioworks/geckopy
Enzyme-constrained genome-scale models in python
krassowski/multi-omics-state-of-the-field
Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"
saramasarone/enrich_omics
A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)
cran-task-views/Omics
CRAN Task View: Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics
idrblab/NOREVA
R Package for Systematic Optimization of Metabolomic Data Processing
roshchupkin/hase
Framework for efficient high-dimensional association analyses.
aws-samples/amazon-omics-webapp-integrations
This project contains the webapp sample integrated with AWS HealthOmics, which allows users such as admin and bioinformaticians to operate Amazon Omics workflow easily and check the run command status with charts and tables.
futianfan/GenoCraft
GenoCraft: A Comprehensive, User-Friendly Web Platform for High-Throughput Omics Data Analysis and Visualization (https://arxiv.org/pdf/2312.14249)
gmiaslab/pyiomica
PyIOmica (pyiomica) is a Python package for omics analyses.
transbioZI/BioMM
BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data
delosh653/ECHO
An application to find and visualize circadian rhythms in time course data using extended harmonic oscillators.
DEMENT-Model/DEMENTpy
A spatially explicit trait- and individual-based microbial systems modelling framework
soumitag/SLIDE
A visualization tool for Systems-Level Interactive Data Exploration
cwieder/py-ssPA
Single sample pathway analysis tools for omics data
Reed-CompBio/spras
Signaling Pathway Reconstruction Analysis Streamliner (SPRAS)