Starlitnightly/omicverse

To do list in the version of `1.5.2`

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Starlitnightly commented

single cell RNA-seq

  • Add DEseq2 to find marker of clusters
  • Add MIRA to calculate the LDA and integrate scATAC-seq
  • Add Palantir to calculate the pseudotime
  • Add module of cluster included Leiden/Louvain/GMM

spatial RNA-seq

  • Add whole pipeline to analysis spatial RNA-seq
  • Add tangram to predicted cell fraction of spot
  • Add STAGATE to cluster the stRNA-seq