aopisco

automated-sc-RNA-seq-analysis-in-the-cloud

Cluster_Ensembles

A package for combining multiple partitions into a consolidated clustering. The combinatorial optimization problem of obtaining such a consensus clustering is reformulated in terms of approximation algorithms for graph or hyper-graph partitioning.

DermisMaturation

CC3D model of the mouse dermis

diffxpy

Differential expression analysis for single-cell RNA-seq data.

disney-wedding

maca-analysis-scripts

Code and annotations for the Tabula Muris single-cell transcriptomic dataset.

normjam.github.io

Normjam: a workshop on the normalization of scRNA-seq data

tabula-muris

Code and annotations for the Tabula Muris single-cell transcriptomic dataset.

tabula-muris-senis

Tabula Muris Senis

tabula-muris-vignettes

Examples analyses using the single-cell RNA-seq data from mouse cell atlases

aopisco/disney-wedding

aopisco/automated-sc-RNA-seq-analysis-in-the-cloud

aopisco/Cluster_Ensembles

A package for combining multiple partitions into a consolidated clustering. The combinatorial optimization problem of obtaining such a consensus clustering is reformulated in terms of approximation algorithms for graph or hyper-graph partitioning.

aopisco/DermisMaturation

CC3D model of the mouse dermis

aopisco/diffxpy

Differential expression analysis for single-cell RNA-seq data.

aopisco/maca-analysis-scripts

Code and annotations for the Tabula Muris single-cell transcriptomic dataset.

aopisco/normjam.github.io

Normjam: a workshop on the normalization of scRNA-seq data

aopisco/open-data-registry

A registry of publicly available datasets on AWS

aopisco/pyjanitor

Clean APIs for data cleaning. Python implementation of R package Janitor

aopisco/scanpy-demo-czbiohub

single-cell scanpy teaching

aopisco/scBC

aopisco/scikit-learn

scikit-learn: machine learning in Python

aopisco/scipy-voila-demo

Semo of voila at scipy 2019

aopisco/tabula-sapiens-paper2

Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens