mxposed
PhD student at @NUPulmonary. Analysing (sc)RNA-seq and EHR in pulmonary diseases. Interactive visualisation, infrastructure, photography, beginner jazz piano
Northwestern UniversityChicago
Pinned Repositories
funkyheatmapjs
Visualising data frames as funky heatmaps 📊
cv
Curriculum vitæ, html→pdf generation
mezzanine-theme-moderna
Mezzanine CMS theme Moderna
notebooks
Collection of random jupyter notebooks
seamless_database_pool
Add support for master/slave database clusters in ActiveRecord to improve performance.
teamcity-openstack-plugin
Teamcity plugin to add openstack integration
which_genome
Identify genome build from a list of genes
mxposed's Repositories
mxposed/cv
Curriculum vitæ, html→pdf generation
mxposed/notebooks
Collection of random jupyter notebooks
mxposed/press
Scriptable markup language for PDF generation
mxposed/sickle
MS thesis
mxposed/2022-multimodal
mxposed/2024-stat-rethinking
mxposed/abot
mxposed/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
mxposed/CellBender
CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
mxposed/cellBrowser
Python pipeline and Javascript scatter plot library for single-cell datasets
mxposed/condot
Supervised Training of Conditional Monge Maps
mxposed/dsn-intro
mxposed/hood
mxposed/ibex
Psycholinguistic experiments online
mxposed/morpheus.js
JavaScript matrix visualization and analysis
mxposed/mxposed.github.io
mxposed/openproblems-website
Website hosted at https://openproblems.bio
mxposed/plan
mxposed/python-data-science
Python for data science course
mxposed/pythonvisualization
Workshop Materials
mxposed/renv
renv: Project environments for R.
mxposed/reproducibility-talk
mxposed/scanpy
Single-cell analysis in Python. Scales to >1M cells.
mxposed/scarches
architecture surgery and transfer learning for single-cell
mxposed/scFormer
mxposed/seurat
R toolkit for single cell genomics
mxposed/SingleCellOpenProblems
Formalizing and benchmarking open problems in single-cell genomics
mxposed/spectra
Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms
mxposed/statannotations
add statistical significance annotations on seaborn plots. Further development of statannot, with bugfixes, new features, and a different API.
mxposed/worrybot