genetics

MareesAT/GWA_tutorial

A comprehensive tutorial about GWAS and PRS

trekhleb/self-parking-car-evolution

🧬 Training the car to do self-parking using a genetic algorithm

wilkox/gggenes

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

theislab/cellrank

CellRank: dynamics from multi-view single-cell data

intermine/intermine

A powerful open source data warehouse system

sgkit-dev/sgkit

Scalable genetics toolkit

lgmgeo/AnnotSV

Annotation and Ranking of Structural Variation

tskit-dev/msprime

Simulate genealogical trees and genomic sequence data using population genetic models

DecodeGenetics/graphtyper

Population-scale genotyping using pangenome graphs

apriha/lineage

tools for genetic genealogy and the analysis of consumer DNA test results

zhanxw/rvtests

Rare variant test software for next generation sequencing data

cmap/cmapPy

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

plashchynski/awesome-genetics

A curated list of awesome personal genomics software, libraries, and educational resources.

mentatpsi/OSGenome

An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies

molgenis/molgenis

MOLGENIS - for scientific data: management, exploration, integration and analysis.

labsquare/cutevariant

A standalone and free application to explore genetics variations from VCF file

cx0/chatGPT-for-genetics

Chat with Open Targets genetics database leveraging text-to-graphQL capabilities of OpenAI Codex.

Griffan/VerifyBamID

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

ArnovanHilten/GenNet

Framework for Interpretable Neural Networks

hardingnj/xpclr

Code to compute the XP-CLR statistic to infer natural selection

ODiogoSilva/TriFusion

Streamlining phylogenomic data gathering, processing and visualization

RCollins13/HumanIdiogramLibrary

Resource of human chromosome schematics & images

mmkim1210/GeneticsMakie.jl

🧬High-performance genetics- and genomics-related data visualization using Makie.jl

broadinstitute/pyro-cov

Pyro models of SARS-CoV-2 variants

nasa/GeneLab_Data_Processing

twoXes/awesome-structural-bioinformatics

Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.

statgen/locuszoom-standalone

Create regional association plots from GWAS or meta-analysis

thierrygosselin/radiator

RADseq Data Exploration, Manipulation and Visualization using R

gtonkinhill/fastbaps

A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data

j-andrews7/Genotify

A minimal desktop app for easy and convenient gene annotation and lookup.

BioJulia/PopGen.jl

Population Genetics in Julia

micutio/innit

A roguelike game where you play a micro organism inside a larger organism!

tbates/umx

Making Structural Equation Modeling (SEM) in R quick & powerful

rivas-lab/covid19

As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.

varfish-org/varfish-server

VarFish: comprehensive DNA variant analysis for diagnostics and research