lgmgeo/AnnotSV

Issues

• AnnotSV BioConda Environment: Reference Issues For GRCh38

  #255 opened 6 days ago by yr542
  0

• issue with annotation of input vcf file

  #254 opened 7 days ago by dasn588
  1

• AnnotSV" line 283

  #250 opened 7 days ago by bioinfomatio
  13

• Invalid Path Error for Bedtools in AnnotSV 1.1.1

  #252 opened 15 days ago by Jimaz
  4

• VCF for false positive deletion and for compound heterozygosity

  #251 opened 21 days ago by paolomaccallini-hub
  3

• 'TAD_coordinate' and 'ENCODE_experiment' columns missing in 3.4.2 result

  #253 opened 15 days ago by Stikus
  2

• frameshift between full and split mode

  #248 opened a month ago by methionine23
  5

• UCSC link failed to open the correct position

  #249 opened a month ago by lmanchon
  5

• AnnotSV passing wrong arguments to variant convert

  #246 opened 2 months ago by GACGAMA
  5

• Keep AnnotSV_ID consistent with SV_chrom

  #247 opened a month ago by xiucz
  10

• exomiser error: connect failed connection refused

  #244 opened 2 months ago by gevro
  2

• vcf errors

  #245 opened 2 months ago by gevro
  1

• Multiple column and tab errors with CNVkit vcf output

  #241 opened 2 months ago by GACGAMA
  4

• left gene

  #242 opened 2 months ago by bioinfomatio
  15

• Mapping of structural variant to intron or coding regions

  #243 opened 2 months ago by priyambial123
  2

• custom bed annotation. overlap within n bases

  #240 opened 2 months ago by blaverty
  2

• Rogue double quote in PRDM10

  #239 opened 3 months ago by bwubb
  6

• MAF in gnomAD

  #235 opened 3 months ago by somayehbakhtiari
  1

• CytoBand appear...

  #234 opened 3 months ago by bioinfomatio
  3

• Question about reverse strand genes

  #238 opened 3 months ago by bwubb
  7

• New long-read population reference

  #237 opened 3 months ago by gevro
  1

• Is there a way to include ensembl_ids and/or hgnc_ids along with gene_name?

  #236 opened 4 months ago by SpikyClip
  3

• PhenoGenius issue

  #218 opened 4 months ago by lgmgeo
  22

• Annotation in progress part costs too long time

  #226 opened 4 months ago by boyanboyue
  7

• mm39 can't use

  #225 opened 5 months ago by uso2015
  5

• Error when converting AnnotSV TSV to VCF (single sample)

  #209 opened 4 months ago by wwgordon
  10

• Web server runjob not responding when input custom vcf file

  #229 opened 5 months ago by Mirror-fish
  4

• Possible to increase number of overlapping features returned?

  #231 opened 4 months ago by mmlian05
  3

• Why is there never a class 2 in ACMG_class?

  #233 opened 4 months ago by jingydz
  1

• Unusual large memory needed for very large sized coupled BNDs

  #232 opened 5 months ago by jamigo
  4

• Cytoband issue

  #210 opened 6 months ago by BoudSTER
  4

• BND negative length

  #228 opened 5 months ago by 5im1z
  4

• The meaning of number behind CLN (Clinvar) in Known pathogenic genes or genomic regions annotation

  #230 opened 5 months ago by namxle
  3

• Error: Invalid record

  #227 opened 5 months ago by bioinfomatio
  3

• Error with example command

  #224 opened 5 months ago by arkatebi
  1

• Assessment of ClinGen criteria 2F/4O

  #215 opened 5 months ago by milena-andreuzo
  4

• v3.4 Exomiser issue

  #216 opened 6 months ago by abrusell
  3

• AnnotSV structural variant chromosome start/stop position does not match VCF file position

  #217 opened 6 months ago by mxiong2
  2

• How to rank/prioritize inversions?

  #223 opened 6 months ago by lgmgeo
  7

• Genehancer files not being recognized

  #221 opened 6 months ago by alexanderchang1
  9

• About CNV calling result from WES method

  #206 opened 9 months ago by GaianX39
  1

• No vcf or circos results from the web server

  #213 opened 6 months ago by DeMagicscience
  3

• Annotations - website

  #222 opened 6 months ago by priyambial123
  4

• change Gene annotations into Gencode version

  #220 opened 6 months ago by IcyYeyangchen
  4

• Same region not annotated in split annotation mode

  #219 opened 6 months ago by priyambial123
  2

• How to use the bioconda version of AnnotSV

  #214 opened 6 months ago by fanavarro
  3

• Issue for VCF conversion when two translocations start from the same position

  #212 opened 7 months ago by nvnieuwk
  2

• tclversion issue

  #211 opened 7 months ago by gevro
  3

• First try of AnnotSV (How to set ANNOTSV environment variable)

  #207 opened 7 months ago by handoko12u
  22

• Bed 0 based incompatible with dragen cnv output

  #208 opened 8 months ago by LiviaMoura
  5