Pinned Repositories
bam2maf
Pytthon script for translating BAM/SAM alignment format into Multiple Alignment Format (MAF)
biotea-annotation
RDF annotation for PubMed and PMC using entity recognition tools such as NCBO Annotator and CMA.
biotea-ao
A java representation for the Annotation Ontology
biotea-rdfization
RDF for metadata and content (optional) in PubMed and PMC NXML articles, compatible with Bio2RDF.
biotea-utilities
A common place to store packages and configuration common to other Biotea repositories
DnaCompress
Dna sequence compressor.
evaluomeR
The evaluomeR package is an R package which permits to evaluate the reliability of bioinformatic metrics.
graphlib
Java library for graph algorithms
lexical-analysis-obo-foundry
polideportivo
polideportivo
fanavarro's Repositories
fanavarro/graphlib
Java library for graph algorithms
fanavarro/DnaCompress
Dna sequence compressor.
fanavarro/lexical-analysis-obo-foundry
fanavarro/polideportivo
polideportivo
fanavarro/bam2maf
Pytthon script for translating BAM/SAM alignment format into Multiple Alignment Format (MAF)
fanavarro/biotea-annotation
RDF annotation for PubMed and PMC using entity recognition tools such as NCBO Annotator and CMA.
fanavarro/biotea-ao
A java representation for the Annotation Ontology
fanavarro/biotea-rdfization
RDF for metadata and content (optional) in PubMed and PMC NXML articles, compatible with Bio2RDF.
fanavarro/biotea-utilities
A common place to store packages and configuration common to other Biotea repositories
fanavarro/evaluomeR
The evaluomeR package is an R package which permits to evaluate the reliability of bioinformatic metrics.
fanavarro/gdl-tools
Guideline Description Language tools
fanavarro/hemodonacion
fanavarro/huron
Command line based java application for ontology metrics calculation
fanavarro/huron-web
fanavarro/huron-ws
REST endpoint for calculating ontology metrics
fanavarro/lexical-analysis-snomed-ct
Analysis of readability and structural accuracy in SNOMED CT - Supplemetary material
fanavarro/neosemantics
Graph+Semantics: Import/Export RDF from Neo4j. SHACL Validation, Model mapping and more.... If you like it, please ★ ⇧
fanavarro/ocalm
fanavarro/Ontologies4SDGs
fanavarro/ontology-graph-view
library for ontology metrics.
fanavarro/ontology-shrink
Remove human readable AnnotationAssertion from ontology
fanavarro/ontop
Ontop is a platform to query relational databases as Virtual RDF Graphs using SPARQL. It's fast and is packed with features.
fanavarro/OWL2Vec-Star
Embedding OWL ontologies
fanavarro/readability-utils-protege-plugin
Protege plugin that includes functionality to improve the readability of ontologies
fanavarro/RepresentationComparison
A package for comparing trained embedding models.
fanavarro/semankey-supplementary
fanavarro/semanticSearch-supplementaryInformation
fanavarro/sparql_uniprot
Python application to retrieve information from uniprot through its sparql endpoint interface. It includes a galaxy wrapper.
fanavarro/URIManager
Neo4j plugin for dealing with strings representing URIs